Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 110 / 2e-28 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004323 [exp] 136 / 2e-37 AT4G02780 733 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10022047 [exp] 127 / 2e-34 AT4G02780 812 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042593 [exp] 0 / 1 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006925 [exp] 0 / 1 AT4G02780 759 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052100 [exp] 110 / 2e-28 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 102 / 1e-25 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006921 pacid=23142105 polypeptide=Lus10006921 locus=Lus10006921.g ID=Lus10006921.BGIv1.0 annot-version=v1.0 ATGGAAGACGGTGAGATCAACATCCACCGTACAACACGGCATGGGCAGCGCTTGTTAAAAAAGACGCCGGCGAACATCCACGGTTCCCGGAGTGCCTTGA ATGGATTGCCAACAACCAACTCCCCGACGGAGCGTGGGGAGACGTTCGCATTTTCCAGGCTTACGATCGCATTCTTAACACTCTTGCCTTTGTTGTCGCT CTTACATCCTGAAATATCCATCCCGACAAGCATGAAATTCTTCAACGAGAACGTGAGAAAGCTAGAGGATGAGAGTATGGTGCACATGCCAATCGGATTC GAAGTAGTTTTCCCGTCGCTTCTGGAGCTCGCCACTCGCTTAAACCTCGACGTCAACTCCCCCCACAATTCCCCTGTTCTCCACCAGATTTACGCCGCCG GAAACCTCAAGCTCAAGCGGATCCCTAAGGAAGTACTTGAAAAATTTCCCACGACGCTGCTCTACAGCTTGGAAGGAATGGCATGCACAGGCGGGCTCGA CTAG
AA sequence Show only first row Show all	>Lus10006921 pacid=23142105 polypeptide=Lus10006921 locus=Lus10006921.g ID=Lus10006921.BGIv1.0 annot-version=v1.0 MEDGEINIHRTTRHGQRLLKKTPANIHGSRSALNGLPTTNSPTERGETFAFSRLTIAFLTLLPLLSLLHPEISIPTSMKFFNENVRKLEDESMVHMPIGF EVVFPSLLELATRLNLDVNSPHNSPVLHQIYAAGNLKLKRIPKEVLEKFPTTLLYSLEGMACTGGLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006921 [exp]	0	1

Compare expression of checked genes

Lus10006921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.