Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 538 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 213 / 1e-59 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 159 / 1e-40 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16730 102 / 1e-22 AtTPS02 terpene synthase 02 (.1) AT4G16740 94 / 7e-20 ATTPS03 terpene synthase 03 (.1.2) AT1G61680 92 / 3e-19 ATTPS14 terpene synthase 14 (.1.2) AT2G24210 86 / 2e-17 AtTPS10 terpene synthase 10 (.1) AT3G25820 86 / 3e-17 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25830 86 / 3e-17 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT1G70080 86 / 3e-17 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014673 [exp] 1093 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 809 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 779 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 768 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 754 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 722 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 711 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 402 / 4e-130 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 400 / 4e-130 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 627 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 624 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 235 / 2e-67 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 203 / 7e-56 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 196 / 2e-53 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 124 / 9e-30 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 115 / 6e-27 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308200 [exp] 107 / 3e-24 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 106 / 7e-24 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.015G085500 [exp] 104 / 2e-23 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10006923 pacid=23142095 polypeptide=Lus10006923 locus=Lus10006923.g ID=Lus10006923.BGIv1.0 annot-version=v1.0 ATGCATAATGTCGTCGAGTTTTTTGCGTCTTCGTACGACACTGCATGGATAGCAATGGTACCATCTCCGGCTTCCGGTGAAGCGCCTTACTTTCCGAGCA GTGTTAATTGGATAATAACGAATCAACAACACGATGGATCTTGGGGTCTACCTACTCGCACCAGAGATCCTTTGCTGATGATGAAAGACACTCTTTCGTC GACTTTAGCTTGCATTCTTGCTCTCAGACGATGGGGCATTGGAGACCAACTCATTGGAAAAGGCCTTGGGTTTATGGAGCGGAACTCGGCTGCTCTCGTG GATAAAGCCCAACAAAGCCCAATTGGGTTTGACGTTACATTTCCGGCCATGGTTCTGACCTCCATCAAGGATTTAAATTTGAATCTCCCGCTCAAATCTG TCAACATCGACGCCATTCTCCGGACGAGAGAATCGATTCTCAACGGCGGCTCGCCGAGTCGGAACTCGGAAGGAAGGAATTCTTACTTGGCCTACATCTC TGAAGGAGTTGGCGATTTGCAAGACTGGAGAACCGCCCTCAGATTCCAGAGAAACAACGGCTCTCTGTTCAACTCCCCCTCCGCCACTGCTGCCGCCTTT ATTCACCTTCAGGACCCCAACTCCCTACGCTACCTCCGCTCAGTCGTTGACGTCGATGGCTCAGTTCCAGCGATTTACCCCCATGGGATCTACGCTCGTC TGTGCCTGATTGAAGATGTCGAGATTCTTGGAATGAATCGGCATTTTCGGGATGAAATTAGGTCGGCGTTGGACGAGATTCACGAATTGTGGGAGCAGGG AGATGAAGAGATATTCCTTGATCCCACAACTTGTGCAATGGCATTCCGGATATTACGCCTCAATGGATACTCTGTCTCTCGATTCGAAGAAGATCGGTTT TGGAATGATACTTTAGAAGGCTATTTGAAAGATGAGAGGGCTGTGCTGGAATTGCATAAAGCATCAAAAGTCATTTACCCAAAAGAAGCAATTCTGGAAC GTCAACAGATATGGACAAGGCAGTATTTGATGGAACTGCATGATTCCAAGACCTCCTTGGATAATAATCATGTTTCCAATGCTTGTAAATCCATTTCCTC ACAGGTGTCTAATGTGCTCAATTACCCATTCGAGGTTGATCTAGATCGTTTAACTCACAGAAGAAACATTGAACAATATTGTGTTGATGACACCAGGACC TTGAAATCCTCCTTCAGGTGGCTTACAGAATACAAGTTGGACGAACTGAGGTTGGCCAAAGTGAAGATAGGATATTGTTGCTTCACCGCTGCAGCAACAT TCTTTGATCCTAAGCTCTCTCATGCCCGCATCTCATGGGCTAAACATGGTGTTCTTACTGCCTTCATCGATGACTTGTATGACATTGATGGAACCACAGA GGAAAAGATTAACCTTATTGAGCTCTTGGAGAGGTGGGATGTTGGTGGTCCAAAGGTGGATTTCAGTTCGGAGCGAGTTGAAACGATTTATTGGGCACTT CATAGTGCCATTTGCGAGACTGTGGCCAATGCTTTTCCCTTCCAGGGCCGAAGTGTCATGGATCACGTCGTCCAGACTTGGGTGGATTTGCTGAGAGCAA TGATGCAACAGACAGAATGGTCCAGAACCAACACAAAACCAACACTAGATGAGTACATGAAAACCGCAAGCGTTTCATTGGCTTTAGGACCAGTCGTTCT ACCAGCCCTCTACTTGTTAGGACCTCAGCTCTCAGATGAAGTCGCCCGAGGTCCCCAAATCGATAATCTGTTCATGGTTTTAGGTAACTGCGGGCGTTTG TTGAATGATCGCATGTGCATTGAGGTAATTAAGCAAACCACTCCATGTGCTCTCATTGTCTTGATTTGA
AA sequence Show only first row Show all	>Lus10006923 pacid=23142095 polypeptide=Lus10006923 locus=Lus10006923.g ID=Lus10006923.BGIv1.0 annot-version=v1.0 MHNVVEFFASSYDTAWIAMVPSPASGEAPYFPSSVNWIITNQQHDGSWGLPTRTRDPLLMMKDTLSSTLACILALRRWGIGDQLIGKGLGFMERNSAALV DKAQQSPIGFDVTFPAMVLTSIKDLNLNLPLKSVNIDAILRTRESILNGGSPSRNSEGRNSYLAYISEGVGDLQDWRTALRFQRNNGSLFNSPSATAAAF IHLQDPNSLRYLRSVVDVDGSVPAIYPHGIYARLCLIEDVEILGMNRHFRDEIRSALDEIHELWEQGDEEIFLDPTTCAMAFRILRLNGYSVSRFEEDRF WNDTLEGYLKDERAVLELHKASKVIYPKEAILERQQIWTRQYLMELHDSKTSLDNNHVSNACKSISSQVSNVLNYPFEVDLDRLTHRRNIEQYCVDDTRT LKSSFRWLTEYKLDELRLAKVKIGYCCFTAAATFFDPKLSHARISWAKHGVLTAFIDDLYDIDGTTEEKINLIELLERWDVGGPKVDFSSERVETIYWAL HSAICETVANAFPFQGRSVMDHVVQTWVDLLRAMMQQTEWSRTNTKPTLDEYMKTASVSLALGPVVLPALYLLGPQLSDEVARGPQIDNLFMVLGNCGRL LNDRMCIEVIKQTTPCALIVLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006923 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	3.6	0.8154
AT1G03670			ankyrin repeat family protein ...		Lus10013878 [exp]	5.8	0.7008
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	13.6	0.7814
					Lus10037724 [exp]	14.6	0.6448
AT1G54860			Glycoprotein membrane precurso...		Lus10004470 [exp]	16.0	0.7389
					Lus10033211 [exp]	21.4	0.7305
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	25.1	0.6527
					Lus10038080 [exp]	29.7	0.7150
					Lus10036765 [exp]	35.6	0.7129
AT2G20840			Secretory carrier membrane pro...		Lus10031627 [exp]	36.6	0.7126

Compare expression of checked genes

Lus10006923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.