Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 76 / 5e-18 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 39 / 7e-05 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014673 [exp] 140 / 1e-40 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 93 / 6e-24 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006926 [exp] 79 / 2e-20 AT1G79460 60 / 5e-11 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 71 / 5e-16 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 70 / 8e-16 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10020865 [exp] 63 / 9e-14 AT1G79460 130 / 1e-34 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 63 / 3e-13 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 50 / 7e-09 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082400 [exp] 75 / 2e-17 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 74 / 2e-17 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006924 pacid=23142103 polypeptide=Lus10006924 locus=Lus10006924.g ID=Lus10006924.BGIv1.0 annot-version=v1.0 ATGGATGACGAAATCAAAGCGCTGATTGACGAGAAGACGAAAGAACTCTTAAGGTTGGTTTTGGATGAAAGAAATACAGCAGTTCCTAGGGAATGCAGGG AGTTATTCTGGAAAATGAACAAAGTGCTGCACTTGGTTTACAACAAGAGTGACGCATTTAATTCCACTGATTTATTTGCAGCTTCGAAGTCTTTGATTGA GGAACCCATCTCCCTTACTCTTTGA
AA sequence Show only first row Show all	>Lus10006924 pacid=23142103 polypeptide=Lus10006924 locus=Lus10006924.g ID=Lus10006924.BGIv1.0 annot-version=v1.0 MDDEIKALIDEKTKELLRLVLDERNTAVPRECRELFWKMNKVLHLVYNKSDAFNSTDLFAASKSLIEEPISLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006924 [exp]	0	1
AT1G35467		RALFL5	RALF-like 5 (.1)		Lus10006213 [exp]	1.4	0.7325
					Lus10040421 [exp]	7.1	0.7692
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	7.5	0.6807
AT2G27410	B3		Domain of unknown function (DU...		Lus10030996 [exp]	17.5	0.5876
AT2G32885			Rapid alkalinization factor (R...		Lus10000923 [exp]	25.4	0.6786
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10000678 [exp]	25.9	0.6397
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10027821 [exp]	30.7	0.6465
AT5G42905			Polynucleotidyl transferase, r...		Lus10036265 [exp]	31.1	0.6615
AT1G58060			RNA helicase family protein (....		Lus10012694 [exp]	32.9	0.5677
					Lus10000085 [exp]	34.9	0.5983

Compare expression of checked genes

Lus10006924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.