Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 697 / 0 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G79460 255 / 3e-73 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 159 / 6e-40 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16740 88 / 3e-18 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 76 / 4e-14 AtTPS10 terpene synthase 10 (.1) AT4G16730 75 / 9e-14 AtTPS02 terpene synthase 02 (.1) AT5G23960 74 / 2e-13 ATTPS21 terpene synthase 21 (.1.2) AT3G25810 72 / 1e-12 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 70 / 5e-12 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 69 / 5e-12 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022047 [exp] 993 / 0 AT4G02780 812 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042593 [exp] 971 / 0 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004323 [exp] 873 / 0 AT4G02780 733 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006917 [exp] 311 / 6e-100 AT4G02780 210 / 3e-62 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 270 / 2e-78 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 228 / 9e-64 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 222 / 3e-61 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 216 / 1e-59 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 216 / 2e-59 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052100 [exp] 909 / 0 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 904 / 0 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 273 / 9e-80 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 273 / 1e-79 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 200 / 1e-53 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.007G119700 [exp] 104 / 7e-23 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.015G085500 [exp] 96 / 2e-20 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 94 / 8e-20 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.007G118600 [exp] 93 / 2e-19 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 93 / 3e-19 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10006925 pacid=23142097 polypeptide=Lus10006925 locus=Lus10006925.g ID=Lus10006925.BGIv1.0 annot-version=v1.0 ATGTCTTCTCTACTTCACTCCGCTACCATCTCCTCCTCCTCCGTTGTATCCCTTCCGGTGGCCGGAGCTACCTTCTCCTCCCCACGTCCTCTGTTTTCTC CTCCCAGCGTATGGTTGTATAGTGTCCAACAAGGGAAGAAGGGTCACTTTGATGTTCGCTCGAAAAGTTGCGCCATTTCGAAGTCTCGGGCACAAGCCAT GAACGGTTTCCCGGTGATCAAACGGATGCCACCATGGGAGGATGAAGAAGATGATAATGACGAGGAAAGCCTCAACGCGTCCTTAGAAATGGAAATTAAC GAACGTGTAAAGAGTATAAAGCTAATGTTGGAATCCATTGAAGACGGAGAGGTAAGCCCCTCGGCATACGATACTGCCTGGGTTGCAATGGTTCAAGACA TGAATGGGAGTGGGCGCCCACAGTTCCCAGAATGCCTAGAATGGATTGCCAACAATCAACTCCCCGATGGGTCATGGGGCGACAACCTCCTTTTCCAGAC TCATGATCGTATCCTCAACACCCTCGCATGCATCATCGCACTCGCCTTCTGGAACATACATCCCGAAAAATGCCAACAAGGATTGAAGTTTTTCAATGAG AACCTAAACAAGCTCGAGGAAGAGAACATGGAGCACATGCCAATCGGCTTCGAAGTAACTTTCCCATCGCTCATCGATCTCGCTCGTCGTCTAGGTATCG ATGTCCCCCATGATTCCCCTATCTTCAAGCGGATCAATGCCGCTAGGGACATCAAGCTGAAAAAGATTCCGTTGGAAGTGCTGCACACAATCCCGACATC GCTGCTGTATAGTTTGGAAGGAATTGAAGGGTTAGATTGGGAAAGACTGATGAAATTGCAGAACCAAAATGGATCTTTCTTGTATTCAACTTCCTCAACT GCTTATGCTTTGTCACAAACCAATGACCCAAACTGCTTAGCTTTCCTTACCAACATTGTCGACAAGTTCCACGGCGGAGTTCCGGGTGGTTACCCAGTTG ATCTGTTTGAAAATATATGGGTCATTGATCGACTGCAGCGGTTGGGCATTTCAAGATACTTTCAACTCGAGATTAAGAAATGTGTCGATTACATTGAAAA ATTTTGGGACGAAAAGGGAATTTGCTGGGCAAGGAATTCCGAAGTCCGAGACATTGATGATACTGCTATGGGATTCAGGATTTTAAGAATGCACGGTCGT CAAGTTTCACCCGATGTGTTCAAGACCTTTGAGAAAGATGGCGAATTCTTCTGCTTCGTTGGACAATCGAACCAAGCAGTCACTGGATTATTCAACTTGT ACAGAGCATCTCAAGTGTTGTTTCCTGGGGAGGAAGTCCTAGAACGTGCCAAGGAATATGCCTTTAATTTCTTGAAAGACAAGCAAGCTTCTAACGAGCT CTTAGACAAATGGATCATAACTAAGGATTTGCCCGGAGAAGTCGGATATGCACTCGATGTTCAGTTTTACGCAAGTTTACCTCGAGTGGAGAGTAGGTTC TTTATCGAACAATATGGCGGCACTGACGACGTCTGGATCGGCAAAACTCTTTATAGGATGCCAATCGTAAATAACAACGAGTACTTGGAGCTGGCTAAAA TCGACTATAACGATTGTCAAGAAATGCATTGGATGGAGCTAAATACTCTTCAAAAGTGGCATGCGGAGTGTGGATTAGAAGAGTTTGGGGTGAGCAAGAG GAGCTTGCTGTTTCAGTTTTACATGGCGGCTTCCAGTGTGTTCGAACAGGACAGGTCGGAGGAGCGAATGGCGTGGGCTAAGACCAGTATTCTGTTGGAA GCCATACAGTCATACTTCTACGTCAACAACAATTCGAAGGACCAACGAATTGCCTTTGTTCATGAATTCACCCGTGGAATTGGTGTTCGAACATTGAAGA AGGGAAAAAGGAGGCAAGACCTTGTGAAGCTATTGCTCGACACATTAAACAACATCTCCCACCGGGCCCTCCTTGTTCATGACCGGAACATCGGCCACGC TTTGCACAGCTCTTGGGAAGAGTGGCTGGTGAAATGGGAAGAAGAAGGAGAAAGATCAGTTGGAGAAGCAGAGTTGGTGGTAGAGACACTGAGATTGACA AGTGCTACTAATTGTAATTTGGGTTCTGAGGAGTCTTTAGCCACTAGTGATCATCCTCTGTACCGCCAACTCACTGACCTCACCAATGCAGTCTGCCATC AACTTGCCCATTTCCACAATAACAACGATAGCAGCTCGAGAAGAACCACAAGCCCGGAGATAGAGAGTGGCATGCAGGAACTGGTTCGATTAGTAACCCA AAACGAAGAAGCCAATGATGATGAATCGAGTAAGTTAATGAAGCAGACTTTCTTGGATGTGGCCAAGACTTATTACTATACTGCTGTTTGTGACCCTGCA ACCATTGATCATCACATTTCCAAAGTCCTCTTTGAGAGAGTCTATTAG
AA sequence Show only first row Show all	>Lus10006925 pacid=23142097 polypeptide=Lus10006925 locus=Lus10006925.g ID=Lus10006925.BGIv1.0 annot-version=v1.0 MSSLLHSATISSSSVVSLPVAGATFSSPRPLFSPPSVWLYSVQQGKKGHFDVRSKSCAISKSRAQAMNGFPVIKRMPPWEDEEDDNDEESLNASLEMEIN ERVKSIKLMLESIEDGEVSPSAYDTAWVAMVQDMNGSGRPQFPECLEWIANNQLPDGSWGDNLLFQTHDRILNTLACIIALAFWNIHPEKCQQGLKFFNE NLNKLEEENMEHMPIGFEVTFPSLIDLARRLGIDVPHDSPIFKRINAARDIKLKKIPLEVLHTIPTSLLYSLEGIEGLDWERLMKLQNQNGSFLYSTSST AYALSQTNDPNCLAFLTNIVDKFHGGVPGGYPVDLFENIWVIDRLQRLGISRYFQLEIKKCVDYIEKFWDEKGICWARNSEVRDIDDTAMGFRILRMHGR QVSPDVFKTFEKDGEFFCFVGQSNQAVTGLFNLYRASQVLFPGEEVLERAKEYAFNFLKDKQASNELLDKWIITKDLPGEVGYALDVQFYASLPRVESRF FIEQYGGTDDVWIGKTLYRMPIVNNNEYLELAKIDYNDCQEMHWMELNTLQKWHAECGLEEFGVSKRSLLFQFYMAASSVFEQDRSEERMAWAKTSILLE AIQSYFYVNNNSKDQRIAFVHEFTRGIGVRTLKKGKRRQDLVKLLLDTLNNISHRALLVHDRNIGHALHSSWEEWLVKWEEEGERSVGEAELVVETLRLT SATNCNLGSEESLATSDHPLYRQLTDLTNAVCHQLAHFHNNNDSSSRRTTSPEIESGMQELVRLVTQNEEANDDESSKLMKQTFLDVAKTYYYTAVCDPA TIDHHISKVLFERVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006925 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	1.0	0.8692
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	5.7	0.7032
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	6.8	0.7465
					Lus10040955 [exp]	14.3	0.6899
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	16.0	0.6846
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	19.5	0.6954
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	26.0	0.6750
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	30.6	0.6866
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	30.8	0.6603
AT3G14880			unknown protein		Lus10013746 [exp]	33.1	0.6448

Compare expression of checked genes

Lus10006925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.