Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02790 439 / 3e-155 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT2G41670 97 / 2e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G07050 88 / 5e-19 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 75 / 1e-14 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT2G27200 74 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10650 67 / 2e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 62 / 2e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G39960 45 / 4e-05 GTP binding;GTP binding (.1) AT3G12080 45 / 6e-05 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014672 [exp] 480 / 1e-168 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10031060 [exp] 100 / 2e-23 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006578 [exp] 81 / 4e-17 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028574 [exp] 81 / 2e-16 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 79 / 5e-16 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10014654 [exp] 78 / 8e-16 AT4G10650 383 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 62 / 2e-10 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004103 [exp] 62 / 2e-10 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021017 [exp] 61 / 4e-10 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209900 [exp] 468 / 1e-166 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.006G048900 [exp] 92 / 1e-20 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G083100 [exp] 86 / 2e-18 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G241100 [exp] 80 / 3e-16 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 72 / 1e-13 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G017000 [exp] 66 / 9e-12 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G054200 [exp] 44 / 9e-05 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.004G230600 [exp] 43 / 0.0002 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10006927 pacid=23142093 polypeptide=Lus10006927 locus=Lus10006927.g ID=Lus10006927.BGIv1.0 annot-version=v1.0 ATGGATGCCGATCTCTCTTACTGGACCAAGGCACTTCGTCCGGTTCAGTGGTATCCCGGTCACATTGCGAAGTCGGAGAAGGAACTGAAAGAGCAGCTGA AGCTGATGGATGTGGTGATTGAGGTTCGAGACGCCAGAATTCCTTTGTCCACCACACATCCACAGATGGATACTTGGATTGGGAATAGGAAGAGGATCTT GGTTTTGAACAGGGAAGACATGATATCCAAAGATGACAGGAATGCTTGGGCGACTTATTTCTCAAGGCAGGGAGTGAAGGTTATTTTCTCTAATGGCAAG CTTGGAATGGGCAGCACAAGGCTTGCGAGATTAGCTCTGGAGATGGCAGCCAACGTTAATGTTAAACGCAAAGCCAGGGGCCTTCTTCCTCGCCGAGTTC GAGCTGGGATTGTTGGGTATCCAAATGTGGGGAAATCGTCTTTGATCAACCGGCTACTGAAGCGTAGAATGTGTGCTGCTGCCCCGAGACCTGGAATCAC AAGAGAACTCAAATGGGTTCGATTTGGTAAAAATCTGGAGCTGTTAGACTCCCCTGGAATACTCCCAATGCGAATCACTGATCAAACTGCTGCCCTAAAG CTTGCTATGTGTGATGACATTGGAGAAAGATCTTATGACGTTGCCGATGTTGCTGCAATTCTTGTACAGATGCTCATAAGAATTCCGTCAGTTGGTGCAA AAGCTCTTCAGGACCGCTACAAGATCGACCATGATTGCAGCTGTGGTAAAACGAAGACCGTGAGTAGAGCTTTTCTGCAAAGAACTGCTGTTCACTTGGT ATCACTACTCGACCTAACTATGCTTTTGATTTCCACGCACAGATTTGTTCAGAAGCTCGCACTTCACTTGTTCAGTGGAGACACCCATCAAGCAGCTTTC CGCATCTTGGCTGATTTCCGTAAAGGAAAGTTCGGCTGGGTTGCACTCGAGAGACCTCCCAGATGA
AA sequence Show only first row Show all	>Lus10006927 pacid=23142093 polypeptide=Lus10006927 locus=Lus10006927.g ID=Lus10006927.BGIv1.0 annot-version=v1.0 MDADLSYWTKALRPVQWYPGHIAKSEKELKEQLKLMDVVIEVRDARIPLSTTHPQMDTWIGNRKRILVLNREDMISKDDRNAWATYFSRQGVKVIFSNGK LGMGSTRLARLALEMAANVNVKRKARGLLPRRVRAGIVGYPNVGKSSLINRLLKRRMCAAAPRPGITRELKWVRFGKNLELLDSPGILPMRITDQTAALK LAMCDDIGERSYDVADVAAILVQMLIRIPSVGAKALQDRYKIDHDCSCGKTKTVSRAFLQRTAVHLVSLLDLTMLLISTHRFVQKLALHLFSGDTHQAAF RILADFRKGKFGWVALERPPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	0	1
AT3G23080			Polyketide cyclase/dehydrase a...		Lus10000083 [exp]	2.2	0.8963
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	2.8	0.9156
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	3.5	0.8989
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	4.2	0.9079
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	6.9	0.8712
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	8.2	0.8627
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	12.5	0.9047
AT2G17972			unknown protein		Lus10013879 [exp]	13.4	0.8760
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	15.7	0.7977
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	16.8	0.8824

Compare expression of checked genes

Lus10006927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.