Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72890 153 / 7e-41 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT4G16890 149 / 8e-38 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 147 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 144 / 4e-36 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 142 / 2e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44480 142 / 3e-35 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 141 / 3e-35 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16950 141 / 4e-35 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41550 141 / 5e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 140 / 1e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042020 [exp] 381 / 6e-127 AT1G72890 147 / 3e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10019142 [exp] 307 / 3e-98 AT1G72890 140 / 1e-36 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10006929 [exp] 291 / 3e-95 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10014671 [exp] 290 / 2e-94 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018024 [exp] 274 / 3e-85 AT5G18350 108 / 2e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 179 / 1e-47 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 175 / 3e-46 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005827 [exp] 156 / 4e-45 AT5G36930 95 / 2e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10032101 [exp] 163 / 6e-44 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001600 [exp] 189 / 5e-51 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 188 / 8e-51 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G084333 [exp] 180 / 2e-50 AT5G36930 347 / 2e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G068200 [exp] 186 / 8e-50 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G017082 [exp] 185 / 1e-49 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 178 / 3e-49 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 176 / 1e-48 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G105501 [exp] 164 / 8e-48 AT5G36930 158 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 175 / 2e-47 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 176 / 1e-46 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10006928 pacid=23142088 polypeptide=Lus10006928 locus=Lus10006928.g ID=Lus10006928.BGIv1.0 annot-version=v1.0 ATGAACGAAGACAAATTACACCTCCTCGACCGCAAACTATCGATGGCCTTACCACCGCCTCTTCCACTCCCTCCGCCGCTCCCCCGGCTGCCCCTCCGCC TGAAGTACGACGTCTTCCTCAGCTTCCGAGGGGAAGACGTCCGGGGAAGGTTCGTGGACCACCTCTACGCCAGGCTCGAAGGGTTGAAAGTCAACGCCTT CATGGACGACAAGAAGCTGTCGAGGGGGGAAGTGATCGAGAAGTCGATCCTGAAAGCGATCGAACGGTCGAGAATCTCCGTCATCGTGTTCTCATCCGGG TTCGCCAACTCGGAATGGTGCCTGGACGAGCTGGTCAAGATCGTGCGGTGCATAACGAACGGCGGACATGTGGCTATACCAATCTTCTTCCACGTGTCCC CCGACGATGTGGCGGCGCAGGCCGGGGTGTACGAGGAGGCGTTTGCACAGCACGCGAAGGTGTTTAAGAAGAAGAGGGTTGACAATTGGAGGAAGGCTTT GATCACTGTCTCCGGGATTTCCGGATGGGCTTTTGGCGTGAAAGAATCAGAGGCAAAACTAGTGGAAGATATAAGTACGACAATACAAAAAAAGCTTAAG AAAATCGCAAAAAAATTACAGAAACAACAAATTAACACTGAAGCAGCAGCCGCCGCCGACGCCCCAACAAAGTTAGCAAGGTCATCGACGATCAAGGAAA TGAACCTATTTGCCTACCAAGAACTCGAAGACATCGCCGTCATCAGGATATGCGGATTGGGCGGCTTAGAAAGCACAACGTCAGCGAAGCTCGCCTACGA CAATGTACTCGCCCGCACGCAATCTTTCTCCCCCAACCAAACCGGCACTCCGTTTCGATACAAACCGATCCAACCACGAGACCACCTGGACCCGGAGTTG AAATGGAGCCGGAAGATATGGGACAACGATGGGGATATCAACGTGGTAAGAAACAACGTCATCACAGACAAAAACAACAAGAAGAAGGTGTTGGCGGTTG TGGACGACCTGGATAAGCTGGAGAATCTCTTGCACTACGCGGCGAAAGTTGGTTGGTTCGGTTCGGCTAGCCGGGTCGTTATCTCGACCGTGGATGTTTC TAAGAAGCTTCTAAAGGTGGTCCATGTTATTATGGAGGCGGGTGAGGGAGTTAATTGTAATTGTGCAAATAATTACTTAGACGTTGCTTGTTTTACAAGG GATCTGATGAACGGCGGGGATTTGATGAAACGGGTGCTGAAGTCTCTGGCCGGCGGTGGATTGGCCCCGGACATCATTGTGAAATTTCGCCAGGAGACAT TTGATAATGTTGGGATCGATGAGAACGGGAGGCTGGAGATTGTTAGACGTGGGTTTTGGTTCAGCAATGACGTAGAAGAAATTCACGACGAAGATGATTA TCTCGATGATGAGGAGGAGACAACAGTTTCGGACAATGAAGAATGGGATGACAATCCGTGGGAAGAGTGCATTAACCGTGGTGAATCGGAACAAGACGGA GGAGTTAGTGGTGGCGGAGGAACATCATCGCAGCCGGACTGCGACTTGAAGTCATTGCAGAAGCCGCGGCCGCGTAAAGAAGCTAAAGCCCAAGATAGCC TGCTGAAAAATCCGGCTCAACCACCCAAAAATCGGAAGAACGAGGACGATTCTATGAACTGTGCTCCTGCTAATTCTCATCTGAGTACTGTCTATTATCA ATAG
AA sequence Show only first row Show all	>Lus10006928 pacid=23142088 polypeptide=Lus10006928 locus=Lus10006928.g ID=Lus10006928.BGIv1.0 annot-version=v1.0 MNEDKLHLLDRKLSMALPPPLPLPPPLPRLPLRLKYDVFLSFRGEDVRGRFVDHLYARLEGLKVNAFMDDKKLSRGEVIEKSILKAIERSRISVIVFSSG FANSEWCLDELVKIVRCITNGGHVAIPIFFHVSPDDVAAQAGVYEEAFAQHAKVFKKKRVDNWRKALITVSGISGWAFGVKESEAKLVEDISTTIQKKLK KIAKKLQKQQINTEAAAAADAPTKLARSSTIKEMNLFAYQELEDIAVIRICGLGGLESTTSAKLAYDNVLARTQSFSPNQTGTPFRYKPIQPRDHLDPEL KWSRKIWDNDGDINVVRNNVITDKNNKKKVLAVVDDLDKLENLLHYAAKVGWFGSASRVVISTVDVSKKLLKVVHVIMEAGEGVNCNCANNYLDVACFTR DLMNGGDLMKRVLKSLAGGGLAPDIIVKFRQETFDNVGIDENGRLEIVRRGFWFSNDVEEIHDEDDYLDDEEETTVSDNEEWDDNPWEECINRGESEQDG GVSGGGGTSSQPDCDLKSLQKPRPRKEAKAQDSLLKNPAQPPKNRKNEDDSMNCAPANSHLSTVYYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	0	1
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	1.4	0.9532
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	3.9	0.9260
AT1G11770			FAD-binding Berberine family p...		Lus10023365 [exp]	4.1	0.9079
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	5.1	0.9321
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	8.3	0.9047
AT5G49960			unknown protein		Lus10035805 [exp]	9.2	0.9259
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	10.5	0.9148
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	10.5	0.9295
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	10.8	0.9150
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	13.5	0.9245

Compare expression of checked genes

Lus10006928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.