Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72890 132 / 8e-36 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G72920 126 / 7e-35 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G72940 128 / 8e-35 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT4G16890 130 / 3e-34 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G20142 125 / 4e-34 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT4G16990 128 / 1e-33 RLM3 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative AT5G22690 128 / 2e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 128 / 2e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72930 118 / 5e-33 TIR toll/interleukin-1 receptor-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014671 [exp] 370 / 7e-131 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10006928 [exp] 291 / 1e-95 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042020 [exp] 220 / 6e-69 AT1G72890 147 / 3e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10013729 [exp] 166 / 3e-47 AT5G36930 310 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10027920 [exp] 157 / 2e-46 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005827 [exp] 152 / 2e-46 AT5G36930 95 / 2e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019142 [exp] 155 / 2e-44 AT1G72890 140 / 1e-36 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10026845 [exp] 150 / 4e-44 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014582 [exp] 150 / 6e-44 AT1G27170 186 / 9e-56 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G105501 [exp] 164 / 8e-51 AT5G36930 158 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G096849 [exp] 159 / 9e-49 AT5G36930 167 / 4e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G098100 [exp] 157 / 3e-48 AT5G36930 159 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069866 [exp] 157 / 8e-48 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G097050 [exp] 156 / 8e-48 AT5G36930 158 / 3e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G097000 [exp] 167 / 6e-47 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 163 / 2e-45 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 162 / 3e-45 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T002568 [exp] 159 / 3e-45 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G104301 [exp] 162 / 4e-45 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10006929 pacid=23142124 polypeptide=Lus10006929 locus=Lus10006929.g ID=Lus10006929.BGIv1.0 annot-version=v1.0 ATGCCGTTGATGCGACCATCTCCTCCACTTCCGCCGCCGCTCCCCCTGCTGCCACTGAAGTACGACGTCTTCCTCAGCTTCCGTGGAGAAGACGTCCGGG GGAGGTTCGTGGACCACCTCTACGCCAGGCTCCACACCTTGAAAGTCAACGCCTTCATGGACGACAAGAAGCTGTCGAGGGGGAAAGTGATTGAGGACTC GATCTTGAAGGCGATCGAACGGTCGAGAATCTCCGTGATCGTGTTCTCCCCCGGGTTCGCTGACTCGGACTGGTGCCTGGACGAGCTGGTCAAGATCGTG CGGTGCATAACCAGCTTTGGGCACGTGGCTATACCGATCTTCTTCCACGTGTCCCCTGACGACGTGGCGGCGCAGGCCGGGGTTTATAAGAAGGCGTTTG CACAGCACGCGAAGGTGTTTACGAAGCAGAGGGTTGACGGTTGGAGGAAGGCTTTGACTACACTGTCCCGGATTTCCGGATGGCCTTTTAGCGAGAAAGA ATCAGAGGCAAAACTAGTCGAAGATATAAGCACGGCAATACAAAAAAAGCTTAATAAAAATGTCCAGAAATTACCCGCACTGAAGCAAATTACTCATACC CAATCGCCCACCAGCGGCCCGACAAAGTTAGCAACGTCCGCCGGTGCTAAAATTGCCAGCGGCCCAACTAAGTTAGCAACGGCATCCGGTGTTAAAAGTA CAGTCGGCACTACAAAGTTAGCAATGTCGTCCGGTGTTAAAAACACTGTCGGTCACTCAAATTTTGGGTAG
AA sequence Show only first row Show all	>Lus10006929 pacid=23142124 polypeptide=Lus10006929 locus=Lus10006929.g ID=Lus10006929.BGIv1.0 annot-version=v1.0 MPLMRPSPPLPPPLPLLPLKYDVFLSFRGEDVRGRFVDHLYARLHTLKVNAFMDDKKLSRGKVIEDSILKAIERSRISVIVFSPGFADSDWCLDELVKIV RCITSFGHVAIPIFFHVSPDDVAAQAGVYKKAFAQHAKVFTKQRVDGWRKALTTLSRISGWPFSEKESEAKLVEDISTAIQKKLNKNVQKLPALKQITHT QSPTSGPTKLATSAGAKIASGPTKLATASGVKSTVGTTKLAMSSGVKNTVGHSNFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	0	1
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	1.7	0.9604
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	3.5	0.9561
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	4.2	0.9586
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	6.2	0.9436
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	6.7	0.9563
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	8.4	0.9549
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	8.5	0.9408
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	9.0	0.9497
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	9.6	0.9570
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	9.9	0.9580

Compare expression of checked genes

Lus10006929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.