Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63130 660 / 0 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) AT5G19320 588 / 0 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G06000 158 / 3e-45 RNI-like superfamily protein (.1) AT1G10510 91 / 5e-19 EMB2004 embryo defective 2004, RNI-like superfamily protein (.1) AT1G47200 60 / 2e-10 WPP2 WPP domain protein 2 (.1) AT5G43070 54 / 2e-08 WPP1 WPP domain protein 1 (.1) AT5G27940 45 / 2e-05 WPP3 WPP domain protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014670 [exp] 929 / 0 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10034066 [exp] 581 / 0 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10010523 [exp] 579 / 0 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10030829 [exp] 91 / 5e-19 AT1G10510 747 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10030658 [exp] 91 / 8e-19 AT1G10510 759 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Lus10042643 [exp] 53 / 4e-08 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1) Lus10009747 [exp] 52 / 9e-08 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1) Lus10010235 [exp] 52 / 1e-07 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052900 [exp] 729 / 0 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.005G209600 [exp] 723 / 0 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.010G091100 [exp] 639 / 0 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.008G193700 [exp] 87 / 9e-18 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1) Potri.014G021900 [exp] 56 / 6e-09 AT1G47200 115 / 1e-32 WPP domain protein 2 (.1) Potri.002G122000 [exp] 54 / 2e-08 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006930 pacid=23142113 polypeptide=Lus10006930 locus=Lus10006930.g ID=Lus10006930.BGIv1.0 annot-version=v1.0 ATGGACTGCCCAGCACCAGTTTTCCAGCCTCGCCAAGTTTCTGTGAAGATGTGGCCTCCAAGTCAGAGTACAAGGTTGACACTCATTGAACGGATGACCA AGAATCTCACCACACCATCCACAATTTCGAGAAAGTATGGTCTGTTGAGCAAAGAAGAAGCTAAAGAGGATGCCAAGAAAATAGAACAAGTGGCTTTTGA TGCAGCAAGCCGGCACTATGAGAAAGAGCCAGATGGCGATGGAAGCTCTGCTGTGTTACTGTATGCCAAGGAATCTAGCAAGTTGATGCTGGAGGTTCTT AAGCGTGGTCCTAACGTAAAAGAGGAGGGAGAAGATATATCTGCTGAGCTAGATAAAATTCCAGAAATTAGTGTTTTTGATATCTCCGGTGGACGAAGGG CGTTTATTGAAGCAGCAGAAGCGGAGGATCTTCTGAGGCCGCTTACTGAACCAGGAAATTCGTTTACTAGGATATGTTTCAGCAACAGAAGCTTTGGATT GGATGCTGCCCTGGTTGCAAAACCCATATTGTCATCCATTAAAGACCAGTTAACAGAAGTAGATTTATCTGATTTTGTTGCAGGAAGGCCAGAGACTGAA GCTCTTCAAGTCATGAACGATTTCTCATCAGCTTTGGAGGGATGTAACTTGAGGTATCTCGACCTTTCAAACAATGCTCTGGGGGAAAAGGGTGTCAGGG CTTTTGCGGCACTCATAAAATCCCAGCACAATTTAGAGGAGCTTTATTTGATAAATGATGGCATCTCTGAAGAAGCAGCGCAAGCCGTTCATGAGTTACT TCCTTCAACCGAGAAACTAAGGGTCCTTCAATTTCACAATAACATGACTGGAGATGAAGGTGCTATAGCTATTGCCAAGATTGTGAGACGTTCTAGACTC CTGGAAGATTTTAGGTGTTCTTCAACAAGGGTAGGAGCAGAAGGTGGTGTCGCTCTAGCTGAAGCTCTTGAAACATGTACTCATATGAGGAAGCTTGATC TTCGTGATAACATGTTTGGTGTGGAAGCCGGACTTGCTTTGAGCAAAACTCTGTTGGCTTTCACCAATCTTACTGAGGTTTACCTCAATTATTTGAATCT GGAGGATGAAGGGGCAGAAGTTATTGCCAATGCTCTTAAAGACTCCGCACCTTCTCTTGAAGTTCTGGAAATGGCTGGCAATGACATTACTGTAAAAGGG GCTTCCTCCTTGGCGGAATGTATATTAGCTAAACAATTGCTGACCAAGCTAAACCTAGCTGAGAACGAGTTCAAGGACGAGGGTACTATCTTGATCGCCA AGGCTATAGAAGCTGACCATAACCAGTTAAATGAAGTTGATTTTAGCACTAATGCAATTCGAAGAGCTGGAGCAAGGGTATTGGCACAGACTGTGGTGAA CAAACCTGGATTCAAGTTACTAAATTTGAATGGCAATTTCATATCTGATGAAGGGCTTGACGAATTGAAGACTGTATTTAAGCATTTACCTGATTTGCTC AGTCCTTTGGATGAGAATGACCCTGAAGGTGAAGATTTTGACGAGGATGACAATGATGGCGATGGGGATGAGGATAAGTTAGAATCGAAACTCAAGGGTT TGGAGATCAAGCATGAGGAATGA
AA sequence Show only first row Show all	>Lus10006930 pacid=23142113 polypeptide=Lus10006930 locus=Lus10006930.g ID=Lus10006930.BGIv1.0 annot-version=v1.0 MDCPAPVFQPRQVSVKMWPPSQSTRLTLIERMTKNLTTPSTISRKYGLLSKEEAKEDAKKIEQVAFDAASRHYEKEPDGDGSSAVLLYAKESSKLMLEVL KRGPNVKEEGEDISAELDKIPEISVFDISGGRRAFIEAAEAEDLLRPLTEPGNSFTRICFSNRSFGLDAALVAKPILSSIKDQLTEVDLSDFVAGRPETE ALQVMNDFSSALEGCNLRYLDLSNNALGEKGVRAFAALIKSQHNLEELYLINDGISEEAAQAVHELLPSTEKLRVLQFHNNMTGDEGAIAIAKIVRRSRL LEDFRCSSTRVGAEGGVALAEALETCTHMRKLDLRDNMFGVEAGLALSKTLLAFTNLTEVYLNYLNLEDEGAEVIANALKDSAPSLEVLEMAGNDITVKG ASSLAECILAKQLLTKLNLAENEFKDEGTILIAKAIEADHNQLNEVDFSTNAIRRAGARVLAQTVVNKPGFKLLNLNGNFISDEGLDELKTVFKHLPDLL SPLDENDPEGEDFDEDDNDGDGDEDKLESKLKGLEIKHEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	0	1
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10032511 [exp]	5.9	0.7576
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	7.6	0.7605
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	8.0	0.7597
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041674 [exp]	11.2	0.7454
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041675 [exp]	15.0	0.7124
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	16.8	0.7651
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040007 [exp]	22.0	0.7600
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	24.5	0.7091
AT2G13690			PRLI-interacting factor, putat...		Lus10033484 [exp]	27.7	0.6322
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10037817 [exp]	28.1	0.7256

Compare expression of checked genes

Lus10006930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.