Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63140 571 / 0 CSP41A chloroplast stem-loop binding protein of 41 kDa (.1) AT1G09340 210 / 2e-64 CSP41B, CRB, HIP1.3 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014669 [exp] 667 / 0 AT3G63140 592 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10031435 [exp] 211 / 1e-64 AT1G09340 644 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10001525 [exp] 211 / 2e-64 AT1G09340 638 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053000 [exp] 592 / 0 AT3G63140 594 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.005G209500 [exp] 588 / 0 AT3G63140 597 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.013G006100 [exp] 204 / 6e-62 AT1G09340 647 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Potri.005G010266 [exp] 200 / 2e-60 AT1G09340 652 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10006931 pacid=23142118 polypeptide=Lus10006931 locus=Lus10006931.g ID=Lus10006931.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTTCTCTGTCAGCCTCCTCTGCACTCTTCATCTCCTCATCATCATCAAAGCCTCCCCTTACTTCCTTCTCACCAGCTCAACGCCTCACCT TCCCCCACCATTCCCCTGCCCTCTCTGCTTCTTCTTACTCTGTTTCTCCTTCTCCAATCACATTCTCACCCCGCCGCCTCTCTGCCTCCGCTTCCTTCTC CGTCAGGGCCAGCGCGGAGGAGAAGAAGAAGGTTCTGATTGTCAACACCAACAGCGGCGGTCATGCCATTATCGGGTTCTACTTCGCCAAGGAGCTTCTC GCTTCCGGCCATCAGGTCACCGTCCTCACCGTCGGCGATGAGGGCTCCGACAAGATGAAGAAGCCCCCCTTCAGCAGATTCAGCGAAATTGTGAGCGGCG GAGGACGCACTGTGTGGGGAGACCCGGCTGATGTTGGGAAAGTCCTCGCCGGCGAAAGTTTTGATGTTGTTCTTGACAACAATGGCAAGGACCTTGATGC TGTCAAGCAGGTAGCAGACTGGGCGAAAAGTGCAGGAGCAAAGCAGTTCCTCTTCATTAGTAGTGCTGGAATCTACTTGCCTACTGACGAACCTCCCCAT GTTGAAGGAGATGCAGTAAAAAGCAGTGCTGGCCATGTCGGAGTCGAGAAGTACATCGCCGAGACCTTCGGCAACTGGGCATCGTTTCGCCCTCAGTACA TGATTGGGTCTGGCAACAACAAAGACTGTGAGGAATGGTTCTTCGACCGAATCGTCAGGAACAGGCCGATCCCAATCCCAGGTTCAGGGATGCAACTGAC GAACATTTCGCACGCAAAGGATCTCTCATCGATGCTCACAATGGCTGTTGAGAAACCAGAAGCTGCGAGTGGGAACATATTCAACTGTGTCAGTGACAGA GCAGTGACTCTGGATGGAATGGCAAAGCTATGCGCTAAAGCTGTTGGCTTACCTGTCGAAATCGTCCATTATGATCCTAAATCTGCTGGGATTGATTCGA AGAAAGCTTTCCCCTTCAGAACCATGCACTTCTATGCTGAGCCAAGAGCTGCCAAGGAAATTCTGGGATGGAAGCCAGCCACAAACTTGCCTGAAGATCT CAAGGAGCGATTCGAGGAGTATGTCAAGGTCGGCAGAGACAAGAAGGCAATGACATTCGAGTTGGATGATAAGATCCTGGAATCCCTAAAAGTTCCTGCA GCTGTTTAA
AA sequence Show only first row Show all	>Lus10006931 pacid=23142118 polypeptide=Lus10006931 locus=Lus10006931.g ID=Lus10006931.BGIv1.0 annot-version=v1.0 MAAASLSASSALFISSSSSKPPLTSFSPAQRLTFPHHSPALSASSYSVSPSPITFSPRRLSASASFSVRASAEEKKKVLIVNTNSGGHAIIGFYFAKELL ASGHQVTVLTVGDEGSDKMKKPPFSRFSEIVSGGGRTVWGDPADVGKVLAGESFDVVLDNNGKDLDAVKQVADWAKSAGAKQFLFISSAGIYLPTDEPPH VEGDAVKSSAGHVGVEKYIAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRNRPIPIPGSGMQLTNISHAKDLSSMLTMAVEKPEAASGNIFNCVSDR AVTLDGMAKLCAKAVGLPVEIVHYDPKSAGIDSKKAFPFRTMHFYAEPRAAKEILGWKPATNLPEDLKERFEEYVKVGRDKKAMTFELDDKILESLKVPA AV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	0	1
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	1.0	0.9848
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10014669 [exp]	1.4	0.9781
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	2.8	0.9713
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	3.5	0.9535
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	4.2	0.9723
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	5.9	0.9703
AT1G18060			unknown protein		Lus10017999 [exp]	5.9	0.9648
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10039629 [exp]	6.5	0.9674
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	6.7	0.9600
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	7.5	0.9634

Compare expression of checked genes

Lus10006931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.