Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77810 601 / 0 Galactosyltransferase family protein (.1.2) AT1G22015 543 / 0 DD46 Galactosyltransferase family protein (.1) AT1G32930 520 / 0 Galactosyltransferase family protein (.1) AT1G05170 511 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 494 / 4e-175 Galactosyltransferase family protein (.1) AT1G33430 485 / 1e-171 Galactosyltransferase family protein (.1.2) AT4G26940 482 / 3e-170 Galactosyltransferase family protein (.1.2) AT1G11730 451 / 2e-158 Galactosyltransferase family protein (.1) AT5G53340 242 / 4e-77 Galactosyltransferase family protein (.1.2) AT4G32120 227 / 4e-71 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024750 [exp] 802 / 0 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 530 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 527 / 0 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 523 / 0 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10021538 [exp] 494 / 2e-175 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 477 / 5e-168 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 473 / 7e-167 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 469 / 3e-165 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 465 / 3e-163 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089800 [exp] 645 / 0 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 642 / 0 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 525 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 520 / 0 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.002G228900 [exp] 508 / 1e-180 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 496 / 9e-176 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 497 / 1e-175 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 459 / 2e-161 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 452 / 7e-159 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 260 / 6e-84 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006933 pacid=23158104 polypeptide=Lus10006933 locus=Lus10006933.g ID=Lus10006933.BGIv1.0 annot-version=v1.0 ATGAAGGCTCGAAGCAGCAGCAGCAGCAATGGTACCAAAGTCTCCGTTAAATGGATCCCTTTGATATGTGCATTTTGCTTTGCTCTTGGACTTGTCTTCT CTAACAGGAATTGGGTTCAGTACGAATCCAACGCTCAGCTCATATCCCAGCGCCGAAATGAGCAAGAATTGCAGGTGCTATCCGAAGATTCCTTCTCGGC CAAGAAGTCTTCCCAAGGAAAAGATGTTATGGATGAAGTTGTTAAGACCCATGACGCCGTTCAATCTCTAGACAAGTCAATCGCAGTGCTGCAGATGCAG TTGGCAGCTTCTCGGAGTTCTCAGGAGATGATGAGCTTAGCAGCTGCTACTTCTGTATCCCATGAAGGCGGCCCCTCAAGGCCTAAAGTGTTCGTGGTAA TTGGGATTAATACGGCGTTTAGCAGCAGAAAGAGGCGCGATTCTGTCAGAGAGACATGGATGCCACAAGGCGACAAACTTCTGCAACTAGAGAGGGAGAA GGGAATCGTTATTCGGTTCATGATTGGTCATAGTGCTACGTCCAATAGCATTCTTGACCATGCGATTGATTCTGAAGCTGCTCAACATCAAGATTTCCTT AGACTGGAGCATGTGGAAGGGTATCATGAACTTTCTGCAAAAACAAAGATTTTCCTTTCCACGGCAGTTGCAAAGTGGGATGCTGAGTTCTATGTTAAGG TCGATGATGATGTTCATGTCAATCTGGGAATGCTAGCTGCCACCCTCGCTCGTCACCGCTCAAAGCCTAGGGTTTATATTGGGTGCATGAAATCGGGCCC TGTTCTTTCTCAGAAGAATGTCAAATATCACGAACCAGAATCTTGGAAATTTGGGGAAGAAGGGAACAAATACTTTCGACATGCAACAGGACAAATATAT GCTGTTTCAAAAGATCTTGCTACATACATCTCTATCAATCAGCAATTACTACATAAATTCGCCAACGAAGACGTATCTCTTGGTTCTTGGTTGATCGGTC TTGAGGTTGAGCACATCGATGATAGGAATATGTGCTGTGGGACTCCACCAGATTGTGAGTGGAAAGCACAGGCGGGGAATGTGTGTGTTGCATCGTTTGA CTGGAGCTGCAGTGGAATCTGCAAATCAGTGGAGAAGCTAAAATTTGTCCATGAAAGGTGTGGTGAAGGAGACGGCGCTGTGTGGAGTGCTCTTTTATGA
AA sequence Show only first row Show all	>Lus10006933 pacid=23158104 polypeptide=Lus10006933 locus=Lus10006933.g ID=Lus10006933.BGIv1.0 annot-version=v1.0 MKARSSSSSNGTKVSVKWIPLICAFCFALGLVFSNRNWVQYESNAQLISQRRNEQELQVLSEDSFSAKKSSQGKDVMDEVVKTHDAVQSLDKSIAVLQMQ LAASRSSQEMMSLAAATSVSHEGGPSRPKVFVVIGINTAFSSRKRRDSVRETWMPQGDKLLQLEREKGIVIRFMIGHSATSNSILDHAIDSEAAQHQDFL RLEHVEGYHELSAKTKIFLSTAVAKWDAEFYVKVDDDVHVNLGMLAATLARHRSKPRVYIGCMKSGPVLSQKNVKYHEPESWKFGEEGNKYFRHATGQIY AVSKDLATYISINQQLLHKFANEDVSLGSWLIGLEVEHIDDRNMCCGTPPDCEWKAQAGNVCVASFDWSCSGICKSVEKLKFVHERCGEGDGAVWSALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77810			Galactosyltransferase family p...		Lus10006933 [exp]	0	1
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	2.4	0.8634
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042168 [exp]	4.5	0.8632
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	4.9	0.8622
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	8.2	0.8376
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	9.7	0.8343
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	12.2	0.7983
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10011812 [exp]	14.1	0.8136
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	15.3	0.8253
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	18.9	0.8064
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	19.3	0.8200

Compare expression of checked genes

Lus10006933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.