Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36160 3626 / 0 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 3553 / 0 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT5G35360 213 / 1e-58 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 198 / 4e-52 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT1G29900 64 / 1e-09 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024748 [exp] 2877 / 0 AT1G36160 2397 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10024747 [exp] 826 / 0 AT1G36160 632 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10003679 [exp] 222 / 4e-60 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2) Lus10017534 [exp] 213 / 9e-59 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 210 / 3e-57 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 213 / 7e-56 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 204 / 4e-54 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10042899 [exp] 193 / 5e-52 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10022078 [exp] 124 / 5e-31 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092700 [exp] 3792 / 0 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.005G169100 [exp] 3774 / 0 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.006G078200 [exp] 216 / 1e-59 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.018G146300 [exp] 215 / 2e-59 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 208 / 2e-55 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.010G023100 [exp] 58 / 8e-08 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08326 [flax] [poplar] ACC_central Acetyl-CoA carboxylase, central region CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain CL0127 [flax] [poplar] ClpP_crotonase PF01039 [flax] [poplar] Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10006934 pacid=23158095 polypeptide=Lus10006934 locus=Lus10006934.g ID=Lus10006934.BGIv1.0 annot-version=v1.0 ATGGTGGTTGTCGGGCGTACTAATGGATACTTGAATGACACGGTTCCGATGAGAAGCTCCGCAGCCACAGTTGCGCAAGTCGATGAGTTCTGCCGTGCCC TTGGAGGGAACAAACCAATCCATAGTATTTTGATCGCTAACAATGCCATGGCTGCTGTCAAGTTCATTCGTAGTGTTAGAACATGGGCTTATGAAACTTT TGGCACAGAAAAGGCCATATTGTTGGTTGCTATGGCTACTCCTGAGGACATGAGAATCAATGCCGAACACATTAGAATGGCTGATCAATTCGTTGAAGTT CCTGGCGGCACCAACAATAATAACTATGCCAATGTCCAGCTTATTGTCGAGATGGCAGAGATAACACGTGTTGATGCTGTTTGGCCTGGATGGGGTCATG CATCTGAGAACCCTGAACTGCCAGATGCTCTAAATGCCAAAGGGATTATATTTCTTGGACCCCCAGGTCCTTCTATGGGAGCATTAGGGGATAAGATTGG CTCTTCGTTGATTGCTCAAGCTGCTGATGTTCCTACCCTTCCATGGAGTGGCTCTCATGTTAAAATGTCTCAAGAAAATAGCCTGTTTACTATCCCGGAT GACATTTACAGGCAAGCATGTGTGCATACAACTGAGGAAGCCATTGCTAGTTGTCAAGTTGTTGGTTACCCTGCAATGATCAAGGCATCTTGGGGTGGTG GTGGTAAGGGGATAAGGAAGGTTCACAATGATGATGAAGTTAGAGCATTGTTCAAGCAAGTTCAGGGTGAAGTTCCTGGTTCACCCATATTTATAATGAA AGTTGCTTCTCAGAGCCGACATTTAGAGGTGCAGTTACTCTGTGATCAATACAGTAATGTAGCAGCCTTACATAGTCGTGATTGCAGTGTCCAGAGGAGG CACCAGAAGATTATTGAGGAGGGTCCCATTACCATTGCGCCATTGGAGACTGTTAAGAAGTTGGAGCAGGCAGCTCGAAGATTGGCAAAAAGTGTGAATT ATGTTGGTGCAGCCACAGTTGAGTATTTGTATAGCATGGACAGTGGGGATTATTACTTTTTGGAACTCAACCCTCGGCTACAGGTGGAGCACCCTGTTAC TGAATGGATCGCTGAGATAAATTTACCAGCTGCCCAGGTTGCCGTTGGGATGGGTATTCCTTTATGGCAAATTCCTGAGATACGGCGATTTTATGGAGTA GAATATGGTGGAGGGTATGATGCTTGGAGGAACACGTCTGCTTTTGCAACATCTTTTGACTTTGACAAAGCAGAATCTATCAAGCCCAAAGGTCATTGTG TAGCAGTGCGTGTTACCAGCGAGGATCCGGATGATGGTTTCAAGCCTACCAGTGGGAAAGTACAGGAACTTAGTTTTAAAAGTAAGCCAAATATATGGGC TTACTTCTCCGTCAAGTCTGGAGGAGGTATTCATGAATTTTCTGATTCCCAATTTGGACATGTATTTGCATTTGGGGAGTCTAGAGCTTTGGCTATAGCA AATATGGTATTAGGTCTGAAAGAAATTCAAATCAGAGGAGAAATTCGCACCAATGTTGATTACACTGTCGATCTTCTACATGCTTCAGATTATAGAGACA ACAAAATCCATACGGGTTGGTTGGATAGTAGGATTGCCATGCGGGTTAGGGCTGAAAGGCCCCCTTGGTATCTATCTGTTGTTGGAGGTGCTTTATATAA AGCATCGGCTAGCAGCGCAGCTGTGGTGTCAGATTATGTTGGTTATCTTGAAAAGGGCCAGATTCCTCCCAAGCACATATCACTTGTGAACTCTCAAGTG TCATTGAATATTGAAGGAAGCAAATACACGATTGACATGGTTAGAGGGGGACCAGGAAGTTACAGATTGAGGATGAATGGTTCAGAGATTGAAGCAGAGA TTCATACTTTACGTGATGGAGGCTTATTGATGCAGGCAAATGGGAAGAGTCACGTGATATATGCAGAGGAAGAGGCTGCTGGAACTCGGCTGCTCATTGA TGGAAGAACTTGCTTATTGCAAAATGATCACGATCCTTCAAAATTAATTGCAGAGACTCCATGCAAGCTACTGAGATATTTGGTTTCAGATGGTAGTCAT GTTGATGCTGATACTCCATATGCAGAGGTTGAAGTTATGAAGATGTGTATGCCTCTCCTGTCACCTGCCTCTGGAGTTGTTCACTTTAAAATGTCTGAGG GTCAAGCAATGCAGGCCGGTGAGCTTATAGCAAGTCTTGATCTTGATGATCCATCGGCAGTACGAAAGGCTGAACCTTTTCACGGTAGCTTCCCCATATT GGGACCTCCAACTGCAATTTCCGGCAAAGTTCATCAGAGATGTGCTGCTAGTGTAAATGCTGCTCGCATGGTTCTTGCTGGCTATTATCATACCATTGAT GAAGTAGTGCAGAACCTGCTCAATTCACTTGATAGTCCCGAACTTCCTTTTCTTCAATGGCAAGAATGTTTTGCTGTTCTGGCAAATCGCCTTCCTAAAG GGCTCAGAATTGAGTTGGAATCAAGATATAGGGAGTTTGAAGAGATATCTAGGTCTCAGACTGTTGATTTCCCAGCGAAACCGCTGAGGGTTGCTCTTGA GGCGCATTTATCATCTTGTCCTGAAAAGGAGAAAGGAGCCCAGGAAAGGATAGTAGAACCTTTGATGAGTCTTGTTAAGTCTTATGAAGGTGGCAGGGAA AGTCATGCTCGACTTATAGTTCAGTCACTTTTCGAAGAGTATTTGTCGGTTGAAGAATTATTTAGTGATAATATTCAGGCCGATGTGATCGAACGGCTTC GACTTCAATATAAGAAAGATCTGCTGAAGGTTGTGGATATTGTACTGTCTCATCAGGGTGTGAAGAGTAAAAACAAGCTGATACTAAGGCTTATGGAACA ACTGGTTTATCCTAACCCTGCAGCATATAGGGACAAATTGATCCGGTTCTCTCAACTTAACCACACAAGTTACTCTGAGCTGGCTTTGAAGGCAAGTCAA CTCCTCGAACAAACAAAACTGAGTGAACTTCGTTCTACCATTGCTAGAAGTCTCTCTGAGTTGGAGATGTTTACTGAAGATGGGGAGAACATGGACACTC CAAAGCGAAAAAGTGCCATTAATGAACGAATGGAGGATCTTGTCAGTGCACCTTTAGCAGTTGAAGATGCCCTTGTGGGCCTCTTTGATCACAGTGATCA TACGCTTCAAAGGCGGGTTGTCGAAACCTATGTTCGTAGGCTGTACCAGCCTTATCTTGTAAAGGGCAGTGTGAGAATGCAGCGGGATAGATCTGGCCTT ATTGCATCATGGGAGTTCGTGGAAGAGCATATTGAGAGAAAGAATGGTTCCGGAGATGAAATGTTTGATAAGCTAATAGTCGAGAAACATTCCGACAGAA AATGGGGAGCCATGGTCATCATCAAATCTCTTCAACTTTTGCCAGCGACTGTCTGTGCTGCATTAAGAGAAAGGTCGAACAACCTTGATGGCTATGGTGA ATCACATGGATTTGGTAATATGATGCATATTGGGTTGGTAGGCATAAACAACCAGATGAGTCTACTGCAGGACAGTGGTGATGAAGATCAAGCGCAGGAA AGAATCAAGAAGTTAGCTAAGATACTCAAAGAGGGAGAAGTAGGATCAATTTTGCGCTCTGCAGGCGTTGGGGTTATTAGTTGCATCATACAGAGGGATG AAGGGCGACCACCTATGAGGCACTCCTTCCATTGGTCAGCGGAAAAGAAATATTTTGCTGAAGAACCTTTATTGAGACATCTAGAACCTCCACTTTCAAT CTATCTGGAACTGGACAAGCTCAAAGGGTATGGGAATATACAATATACTCCGTCAAGGGACCGACAATGGCATTTATACACTGTCATTGATAAGCCAGTT CCAATCCAGCGGATGTTTCTTAGATCACTAGTACGGCAACCAACTTCCCCAGATGGATTTACTGCATATCAAGGACTGGCAATGGAAGCATTTCTGTACC TCTGTATCTTGCGTGAGCAAAACATAGAAGATCTTGTGCCTTATCCCAAAAGAGTTGAGGATTATGCTGGACAAGAAGAAGCTGTTGTTGAGACAATTTT GGGAGAATTAGCAAGGCAAATCCACAGATTTGCTGGTGTGAGAATGCATAGGTTAAGTGTTTGTGAGTGGGAAGTGAAGTTATGGATTGGGTCACAAGGA GAGGCAAATGGTGCCTGGAGGGTTGTTGTCACCAATGTTACTGGTCATACCTGTACCGTGCATATATACAGGGAACTAGAGGACACCTCTAAGCACACAG TGGTATACCATTCGAGCTCCGCAGAGTGCCCTCTCCAAGGAATATCGGTGAATGCTGAGTATCCACCATTGGGTTTTCTTGACAGAAAGCGTCTAGTGGC AAGGAGGAGTAGTGCCACTTACTGCTATGATTTTCCATTGGCATTTGAGACATCCTTGAGAGAATTATGGGCTTCCCAGTATCCCGAATTTGCAGTGAGG AAGGATAAAGGTCTTCTCAAAGTAACAGAGCTTGTATTTTCTGATAAGGAAGGTCTTTGGGGCACTTCCCTGGTTTCTTCTGAACGCCCGACTGGGCTTA ATGATGTGGGGATGGTGGCATGGAGCATGGAAATGTCAACTCCTGAATTCCCTGCTGGAAGGACAATAATCATAGTGGCAAATGATGTGACATTTAAAGC TGGATCTTTTGGACCAAAAGAAGATGCCTTCTTTGCTGCAGTTACCGAGCTGGCTTGTTCCAAGAAGTTGCCACTAATTTATTTGGCTGCAAATTCTGGT GCTCGTATTGGCGCCGCTGAGGAGGTCAAGTCCTGCTTCAAAGTTGGGTGGTCAGATGAAGTATCCCCAGAGCGTGGTTTTCAGTATGTGTATTTGACTG GGGAGGATTACAGTCGCATTAAATCATCCGTGGTTGCACACAAGTTGAAGCTGGATAGTGGAGAAACTAGGTGGGTTATAGATGCTATTGTTGGTAAGGA GGATGGTCTAGGAGTTGAGAATTTATCGGGGAGTGGAGCTATTGCTAGTGCATATTCTAGGGCATATGGGGAAACATTTACCTTGACTTATGTTACTGGA AGAACTGTTGGTATTGGTGCTTACCTTGCACGCCTTGGCATGCGCTGCATACAGAGGCTTGATCAGCCAATCATTTTGACTGGTTTCTCTGCATTGAACA AACTTCTGGGTCGTGAGGTTTATAGCTCTCATATGCAACTTGGGGGTCCTAAAATTATGGCTACTAATGGTGTTGTGCATCTTACAGTATCAGATGATCT TGAAGGAGTAACGGCTATCTTGAAATGGCTGAGTTGCATACCAGCCTACGTGGGTGGTGAACTACCCATTTCAAAACCTCTGGATTCTCCAGAAAGACGT GTGGAATACATCCCCGAAAATTCGTGTGATCCACGGGCTGCTATTGCTGGTGCTGTGGATGGCAGTGGAAAATGGGTGGGAGGTATTTTTGACAAGGATA GCTTTGTTGAGACGCTTGAAGGTTGGGCAAGGACAGTTGTTACCGGAAGGGCAAAGCTGGGAGGAATCCCGGTAGGTATCGTAGCAGTGGAGACACAGAC CGTAATGCAGGTGATCCCTGCTGATCCAGGTCAGCTTGATTCCCATGAGAGAGTTGTTCCTCAGGCTGGGCAAGTATGGTTTCCAGATTCTGCTACGAAA ACAGCTCAAGCAATTCTAGATTTCAACAGAGAGGAGCTTCCCCTATTCATTCTTGCGAACTGGAGAGGCTTTTCTGGAGGGCAGAGGGACCTTTTTGAAG GGATCCTACAAGCTGGTTCTACTATTGTTGAGAACCTCCGAACATACAATCAACCTGTTTTTGTGTACATTCCAATGATGGGAGAGCTTCGAGGCGGAGC ATGGGTTGTTGTAGATAGTCAGATCAATTCAGACCACATTGAAATGTATGCTGATCGTACAGCCAAAGGTAATGTGCTGGAACCGGAAGGAATGATTGAG ATCAAATTCAGGACAAAGGAACTGATTGAGTGCATGAGTAGGCTTGATCAACCATTGATGGCATTGAAGGAAAAGCTTGACAAGGCCAAGAGGAATGGAG ATGGGGGGACGACGACCATGATAGATTGTATACAGCAGCAAGTAAAAGCTAGGGAGAAGCAGTTGTTACCAGTGTACACACAGATTGCAACCAAATTTGC AGAACTCCATGATAGTTCCCTTAGGATGGAGGCGAAAGGGGTGATCAGAAAAGTGGTTGATTGGGAGATATCTCGTTGGTATTTCTATCAAAGGCTACGG AGAAGAATAGCAGAAGCTTCAGTGGTGAAGACAGTGAGAGAAGCTGGTGGGGAGCAGCAAGTTTCTTATAAATGTGGTATGGATATGGTGAAGAGATGGT TTTTAGAATCTGATATTGGAGGAGGTAAAGATGATAGTTGGTTGAGTGATGAATGTTTCTTTCGATGGAGAGACGATGATGATGCAAGTAATTACAAACA AAAGCTGCAAGAGTTGAGGGTTCAAAAAGTGCTTTCACACTTGTCCAATATTGGTGCCTCAGAGGCTGATCTGACTGCTCTTCCTCAAGCTCTTGCTGCC CTTCTAACCAAGGTAGAAGAGTCCTCAAGCAGAAGAGGTGAGTTGGTTGATGAACTGAGGAAGGTGTTGGGTTGA
AA sequence Show only first row Show all	>Lus10006934 pacid=23158095 polypeptide=Lus10006934 locus=Lus10006934.g ID=Lus10006934.BGIv1.0 annot-version=v1.0 MVVVGRTNGYLNDTVPMRSSAATVAQVDEFCRALGGNKPIHSILIANNAMAAVKFIRSVRTWAYETFGTEKAILLVAMATPEDMRINAEHIRMADQFVEV PGGTNNNNYANVQLIVEMAEITRVDAVWPGWGHASENPELPDALNAKGIIFLGPPGPSMGALGDKIGSSLIAQAADVPTLPWSGSHVKMSQENSLFTIPD DIYRQACVHTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYSNVAALHSRDCSVQRR HQKIIEEGPITIAPLETVKKLEQAARRLAKSVNYVGAATVEYLYSMDSGDYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGV EYGGGYDAWRNTSAFATSFDFDKAESIKPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNIWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIA NMVLGLKEIQIRGEIRTNVDYTVDLLHASDYRDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAVVSDYVGYLEKGQIPPKHISLVNSQV SLNIEGSKYTIDMVRGGPGSYRLRMNGSEIEAEIHTLRDGGLLMQANGKSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLIAETPCKLLRYLVSDGSH VDADTPYAEVEVMKMCMPLLSPASGVVHFKMSEGQAMQAGELIASLDLDDPSAVRKAEPFHGSFPILGPPTAISGKVHQRCAASVNAARMVLAGYYHTID EVVQNLLNSLDSPELPFLQWQECFAVLANRLPKGLRIELESRYREFEEISRSQTVDFPAKPLRVALEAHLSSCPEKEKGAQERIVEPLMSLVKSYEGGRE SHARLIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQGVKSKNKLILRLMEQLVYPNPAAYRDKLIRFSQLNHTSYSELALKASQ LLEQTKLSELRSTIARSLSELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQRDRSGL IASWEFVEEHIERKNGSGDEMFDKLIVEKHSDRKWGAMVIIKSLQLLPATVCAALRERSNNLDGYGESHGFGNMMHIGLVGINNQMSLLQDSGDEDQAQE RIKKLAKILKEGEVGSILRSAGVGVISCIIQRDEGRPPMRHSFHWSAEKKYFAEEPLLRHLEPPLSIYLELDKLKGYGNIQYTPSRDRQWHLYTVIDKPV PIQRMFLRSLVRQPTSPDGFTAYQGLAMEAFLYLCILREQNIEDLVPYPKRVEDYAGQEEAVVETILGELARQIHRFAGVRMHRLSVCEWEVKLWIGSQG EANGAWRVVVTNVTGHTCTVHIYRELEDTSKHTVVYHSSSAECPLQGISVNAEYPPLGFLDRKRLVARRSSATYCYDFPLAFETSLRELWASQYPEFAVR KDKGLLKVTELVFSDKEGLWGTSLVSSERPTGLNDVGMVAWSMEMSTPEFPAGRTIIIVANDVTFKAGSFGPKEDAFFAAVTELACSKKLPLIYLAANSG ARIGAAEEVKSCFKVGWSDEVSPERGFQYVYLTGEDYSRIKSSVVAHKLKLDSGETRWVIDAIVGKEDGLGVENLSGSGAIASAYSRAYGETFTLTYVTG RTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVTAILKWLSCIPAYVGGELPISKPLDSPERR VEYIPENSCDPRAAIAGAVDGSGKWVGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATK TAQAILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYNQPVFVYIPMMGELRGGAWVVVDSQINSDHIEMYADRTAKGNVLEPEGMIE IKFRTKELIECMSRLDQPLMALKEKLDKAKRNGDGGTTTMIDCIQQQVKAREKQLLPVYTQIATKFAELHDSSLRMEAKGVIRKVVDWEISRWYFYQRLR RRIAEASVVKTVREAGGEQQVSYKCGMDMVKRWFLESDIGGGKDDSWLSDECFFRWRDDDDASNYKQKLQELRVQKVLSHLSNIGASEADLTALPQALAA LLTKVEESSSRRGELVDELRKVLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10006934 [exp]	0	1
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	3.0	0.8826
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10024613 [exp]	8.9	0.7959
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	9.3	0.8153
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	11.4	0.7882
AT3G13800			Metallo-hydrolase/oxidoreducta...		Lus10004844 [exp]	19.1	0.7052
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	26.8	0.7979
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	36.0	0.7839
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	39.7	0.7481
AT4G19450			Major facilitator superfamily ...		Lus10033271 [exp]	39.9	0.7223
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	40.4	0.7691

Compare expression of checked genes

Lus10006934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.