Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12750 265 / 1e-86 ZIP1 zinc transporter 1 precursor (.1) AT1G05300 251 / 2e-81 ZIP5 zinc transporter 5 precursor (.1.2) AT1G31260 249 / 1e-80 ZIP10 zinc transporter 10 precursor (.1) AT2G32270 248 / 3e-80 ZIP3 zinc transporter 3 precursor (.1) AT2G04032 245 / 6e-79 ZIP7 zinc transporter 7 precursor (.1) AT4G19690 244 / 1e-78 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT1G10970 244 / 5e-78 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT5G62160 230 / 3e-73 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT4G19680 229 / 5e-73 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT2G30080 191 / 2e-58 ATZIP6, ZIP6 ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041613 [exp] 297 / 3e-99 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10024107 [exp] 296 / 1e-98 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041647 [exp] 293 / 1e-97 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10040615 [exp] 273 / 7e-90 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10014062 [exp] 244 / 1e-78 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 228 / 2e-73 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10014063 [exp] 207 / 3e-64 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10031307 [exp] 140 / 9e-41 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10031099 [exp] 119 / 1e-32 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160400 [exp] 297 / 3e-99 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.010G173300 [exp] 291 / 3e-97 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.006G006800 [exp] 291 / 6e-97 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.008G083100 [exp] 291 / 6e-97 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.006G006600 [exp] 285 / 5e-95 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.010G134300 [exp] 267 / 1e-87 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.015G117900 [exp] 266 / 2e-87 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.015G117700 [exp] 262 / 5e-86 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.010G135400 [exp] 200 / 1e-61 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1) Potri.009G074100 [exp] 191 / 2e-58 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10006935 pacid=23158105 polypeptide=Lus10006935 locus=Lus10006935.g ID=Lus10006935.BGIv1.0 annot-version=v1.0 ATGGATACCATCACTCAATTGTTTCCCTCGTTGAACTCCATCGCCGCCGCTGCTACTACTGCTGCTGCACCCTTGGTTTACAAACTCGTGGGGATTTTTT CCATCCTCGTAGCGAGCGCTATCGGGGTTTTGATCCCAATACTCTGCAGAAACATCCCCAGTTTACATCCCGGCAGCAAACTCTTTTTCCTAATCAAGGC CTTCGCCGGTGGAGTCATCCTCGCCACTGGCTTTGTTCATATCCTCCCCGACGCATTCAACAGCCTTTCCAATCCTTGCGCTCCATGGTCCACCTTCCCT TTCCCTGGATTTCTGGCTATGATCTCCGCCGTAATTACAATGATCGTCGACACGGTAGCCACCAGCTATTTTAAAGGATCATCCCCCAAGGACAGCAGCG AATCGGCCCTTCTTCCTTTGCCCGTTGATTTGGAGGAGACCAGTGGCAGTGGTGGTCAAGTCCATCTCCACTCTCATGCCTCTGCTTTTGCTTCTTCCCA TCAATCTCTCGACTCCGATCTTGCTCGCCATAGGGTTGTTTCCCAGGTACTTGAATTGGGGATTGTGTTCCATTCAGTGATAATAGGGATATCGTTGGGG GCATCTGGAAACACCAAGACGATCAAGCCCCTTGTGGCGGCTCTTACATTCCACCAATTCTTCGAAGGATTAGGACTGGGCGCGTGTGTGTCACAAGCCA GTTTCGGAGTACGTGTGGTGACCATGATGGTTGCCTTCTTCTCCCTGACAACTCCGATTGGTATCGCAGCCGGGATATGCATATCCAACATTTACAGTGA CGATGGACATACAAGTGTGGTGGTGGGCGGAGTGATGAACTCTGTCGCTGCAGGAATATTGATATACATGGCGTTGGTAGATTTGTTGGCCCACGATTTC AGTAGCTCTAGATTGGTAGGGAACTTGCAGCTGCAGCTTCAAGGATATGTATCTCTTCTTCTTGGTATGCTCTGCATGTCTTTGTTAGCCGGATGGGCCT AA
AA sequence Show only first row Show all	>Lus10006935 pacid=23158105 polypeptide=Lus10006935 locus=Lus10006935.g ID=Lus10006935.BGIv1.0 annot-version=v1.0 MDTITQLFPSLNSIAAAATTAAAPLVYKLVGIFSILVASAIGVLIPILCRNIPSLHPGSKLFFLIKAFAGGVILATGFVHILPDAFNSLSNPCAPWSTFP FPGFLAMISAVITMIVDTVATSYFKGSSPKDSSESALLPLPVDLEETSGSGGQVHLHSHASAFASSHQSLDSDLARHRVVSQVLELGIVFHSVIIGISLG ASGNTKTIKPLVAALTFHQFFEGLGLGACVSQASFGVRVVTMMVAFFSLTTPIGIAAGICISNIYSDDGHTSVVVGGVMNSVAAGILIYMALVDLLAHDF SSSRLVGNLQLQLQGYVSLLLGMLCMSLLAGWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10006935 [exp]	0	1
AT5G05250			unknown protein		Lus10030528 [exp]	1.7	0.8384
AT5G20790			unknown protein		Lus10007378 [exp]	7.3	0.7764
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	19.4	0.7934
AT3G43110			unknown protein		Lus10020796 [exp]	21.4	0.7665
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	21.8	0.7353
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10020696 [exp]	23.5	0.7711
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	25.5	0.7387
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	25.9	0.7467
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	28.3	0.7609
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	33.5	0.7410

Compare expression of checked genes

Lus10006935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.