Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03090 174 / 1e-47 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024746 [exp] 746 / 0 AT4G03090 281 / 4e-85 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135700 [exp] 345 / 6e-110 AT4G03090 692 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2) Potri.002G213400 [exp] 249 / 2e-74 AT4G03090 638 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006937 pacid=23158102 polypeptide=Lus10006937 locus=Lus10006937.g ID=Lus10006937.BGIv1.0 annot-version=v1.0 ATGGCTATCAACCCATTTCCAGCCTTAGAAGATGCTGTGCAGAAATTCAACGAGAAGAATATCGTTGAAATCTCACTGTCAGAGGTCATGTTTTACAGGC GGGAGAATGAGGTATTCTTTAATCAATTACAGGCAATGATCACTCGTGCTCATTTTGAGGAGACGAAGTATGAGAAATCAGTATCTTTGGATAAGTTCTC GAAGCTAGACATCAATGATCAGGAGGTTCAAAGCTCAGTACCTTTGCACGAGAAGGAACTTTCAAATGCACCTGACAGAATTGACAACCAGAAGGAAGAA ACTATGGAGATTTCTGCTCGGAAAGAGGAGCAACCTAATTCGAGACGCGAGGACGTGAATAATGGGGAGATTGTGAGGCATGGGTCAACGGCCTTGAGGG ATCTCGATAGCAATGTTCAGAATGTTGAAACTAGTAGCTCAGACACCAAAGCTGCAAGAGGGAAGAATTACGTTGATCATACTGATCTCTCCAACCCTGG GAGAAATGACAAAGAAAGTGGAGTCCAGCGAAATCAGGAGGATGAAAAAATTGAAGCTGGTCAATCTGAAGAGAAGCAACCAAGGAAACGGAAACGAACT ATAATGAATGACTATCAGATATCACTTGTTGAGAAGGCGTTGCTGGATGAACCTGACATGCAGAGGAATGCGATATCCTTACAGATTTGGGCTGATAAAT TAAGTCTGCACGGTGCAGAAGTGACGTGTTCGCAACTAAAAAATTGGCTTAACAATCGAAAAGCACGACTAGCACGTGTTGGCAAGGATGCACGTGTGGA GGTTGATAATGCTTCTCCTCAAATGAAGCAAGCTGTACCGCAGCAATCTCGCGACTCAGCTGAGAGTCCTGCTGAAGATAATGCACCATCTAGTGGAAGA GGTACAAGTGAAAGCACATGGATTCATATGACAAGGGATCTTGTAAGTTGTGCGACACAACCTCTCCAATACAGTTTAGGACAGAGAGTTGTGGTGTTGG ATGGGCAAGGTTTGGAGGTTGCCAAGGGGAAGATAAGTCAGGTGAAAGGTAAATGGTACGGAAAGAGCTTGGAAGATGATTATGATCCATCTGCTGCTGC TGCTGGCTTGTGCGTTGTAGATGTGACTGAGCTAAAGGCTGATCGATCGACTCGGATACCATATCCATCAGAGACCACAGGGGCTACGTTTGGCGAGACG GAATCTAGAATTGGAGAAATCAGAGTGTTGTGGGATCCCAAACACTTATATCTCTTGCGCTCTGAATGA
AA sequence Show only first row Show all	>Lus10006937 pacid=23158102 polypeptide=Lus10006937 locus=Lus10006937.g ID=Lus10006937.BGIv1.0 annot-version=v1.0 MAINPFPALEDAVQKFNEKNIVEISLSEVMFYRRENEVFFNQLQAMITRAHFEETKYEKSVSLDKFSKLDINDQEVQSSVPLHEKELSNAPDRIDNQKEE TMEISARKEEQPNSRREDVNNGEIVRHGSTALRDLDSNVQNVETSSSDTKAARGKNYVDHTDLSNPGRNDKESGVQRNQEDEKIEAGQSEEKQPRKRKRT IMNDYQISLVEKALLDEPDMQRNAISLQIWADKLSLHGAEVTCSQLKNWLNNRKARLARVGKDARVEVDNASPQMKQAVPQQSRDSAESPAEDNAPSSGR GTSESTWIHMTRDLVSCATQPLQYSLGQRVVVLDGQGLEVAKGKISQVKGKWYGKSLEDDYDPSAAAAGLCVVDVTELKADRSTRIPYPSETTGATFGET ESRIGEIRVLWDPKHLYLLRSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	0	1
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	1.0	0.9077
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	3.7	0.8902
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	6.6	0.8554
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	8.1	0.8587
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	13.0	0.8506
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	13.3	0.8342
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	15.2	0.8487
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Lus10027086 [exp]	16.2	0.8496
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	16.5	0.8498
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	17.7	0.8430

Compare expression of checked genes

Lus10006937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.