Plant FIBer expression Database

Lus10006938 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03090 437 / 4e-143 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024745
[exp]
759 / 0 AT4G03090 290 / 2e-88 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Lus10024746
[exp]
265 / 5e-81 AT4G03090 281 / 4e-85 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G135700
[exp]
702 / 0 AT4G03090 692 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Potri.002G213400
[exp]
701 / 0 AT4G03090 638 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence
>Lus10006938 pacid=23158097 polypeptide=Lus10006938 locus=Lus10006938.g ID=Lus10006938.BGIv1.0 annot-version=v1.0
ATGCCAATCCGAGCCTCAGTGTCGGAGCTACAAAAGGAGACAACGGTCGTCTGCTCCTCCTTAACCTATTGTGATATCCATTACGCGTTGCCGGTGAAAT
CGTGTTCGATAAGGAGAGAGATCGAGGAAGGCCGCGGGATGAAGCTGATAAGGGATATACCCTTGAATACTGCTGACACGGTTATTGACTTGACTGTTGC
TGTTAGAGAGTTGCATGGCCTTGGGTCTCAGGAGATTAGTAAATTGATAAGAGATGCTGAAAATTTCGTAATTCAGTTGCCCTCCGGAAATGGAGTAGCG
ATTGACATGGAAAAGCTAGCCGTCTTTCTTCCGATGCATCTTATAGCAGTGTTGTTGTCATCCCGTGGAGATGAGCCTGCCTTGACATATGTACTGTGTG
GGTTTCGGCTGTTGCATGTCTTGTATGACCTAGCTCCTCGTCATAGCAAACTAGAGCAGATCTTACTTGACGATGTGAAAGTGTCAGAACAGCTGCTGGA
CCTGATCTTTTATTTACTGATTATAATTCACGGTCATCAAAAGCAGAACCTTCATTCAAGCTCACCATCTCTTCTAGTTCCAGCTGCAGTAGCATGTAGT
CTATACCTATTGACGGGTGTAATATCTACCCAGTGGCAAGATCTTGTTCAAGTTCTTCTTGCACACTCCAAGGTCAACCTATTTATGGATGTTGCTTTTG
GAGCTGTTCATGTAGCTGTTAGGTCTCTTCAGGTCAAGTTGTCAGCTCAAATTACTAGCTCTCAGATGACATCAAATCCAACAGTTGAACAAACTGTTAA
CTATCTTTGCCAACAATGCGAAGCTTCTATACAATTTCTTCATTCTTTGTGCCAACAAAAGCTGTTTAGAGAACGTTTTCTCAGGAGCAAGGAACTGTGT
GCAAAAGGCTGTGTTCTTTTTCTGGTCCAACGACTCTTGAAGTTAAAGATAACTTCTCCAGTTTTGGAATCTCCTAGAGTCGTTTCAAGTTTATCTAGAA
TCAAAGCTAAAGCGTTATCCATTCTGTTAAATCTTTGTGAAGCTGAAAGCATTTCTTATCTTGATGAGGTAGCACGCTCTCCAGGAACCCTGGAGGTAGC
CAAGTCAGTTGCTTTGGAGGTACTGGAAGTACTCAGAGTTGGCATTTGCAGAGGAGGCAGACGTCTTTCAGCTTGTCCTACCAAATCTTCACCCACAGGG
CTTCTCCAACTCAATGCACTTCGACTAGCAGATGTTTTCTCAGATGACTCAAATTTCCGGTCCTACATTACGACAGCCTTTACCAAGGTCCTGACTGCAA
TATTTTCACTTCCTCATGGAGAATTTTTATCAATTTGGTGTTCTTCTGAATTACCTCCAAGAGAGGAAGATGCTACTCTAGACTATGATGCATTTGCAGC
TTGTGGATGGGTTTTGAAGGCCTCTTTGTCTTCAAAGATTTTATGTACAACAATGCTAGAAACTAACCTCATCTCAAGTAGTATGCCTCAAGCTTCCTAT
TCTCACCAGAGGACTTCACTATTTGTTAAAGTTATTGCCAACCTTCATTGTTTTGTTCCCAGCATTTGTGAAGGTCACCTCGATTCCCCTGGTTCTCTTG
TGATGTATAACATGTTGGATCTGCTGGCTCTTCTTTTGACAAACTTCAACTCCTTTTGCTTATTCTCAGAGCAGGAGAGGAACCTCTTCCTTCACAAGTT
TCTTGAGTGCATGCGTCTGGATCCAGCTGAATCGTTGCCTGGATTTACGTTTAGTTATGGAACACAAAAAGCTGCAACTGTTTGCAGGAACTTGCGTTCA
TTATTATGTCACGCTGAATCCTTGATTCCTAACTTCTTGAACGAAGAGGATGTGCAACTCTTGAGGTGA
AA sequence
>Lus10006938 pacid=23158097 polypeptide=Lus10006938 locus=Lus10006938.g ID=Lus10006938.BGIv1.0 annot-version=v1.0
MPIRASVSELQKETTVVCSSLTYCDIHYALPVKSCSIRREIEEGRGMKLIRDIPLNTADTVIDLTVAVRELHGLGSQEISKLIRDAENFVIQLPSGNGVA
IDMEKLAVFLPMHLIAVLLSSRGDEPALTYVLCGFRLLHVLYDLAPRHSKLEQILLDDVKVSEQLLDLIFYLLIIIHGHQKQNLHSSSPSLLVPAAVACS
LYLLTGVISTQWQDLVQVLLAHSKVNLFMDVAFGAVHVAVRSLQVKLSAQITSSQMTSNPTVEQTVNYLCQQCEASIQFLHSLCQQKLFRERFLRSKELC
AKGCVLFLVQRLLKLKITSPVLESPRVVSSLSRIKAKALSILLNLCEAESISYLDEVARSPGTLEVAKSVALEVLEVLRVGICRGGRRLSACPTKSSPTG
LLQLNALRLADVFSDDSNFRSYITTAFTKVLTAIFSLPHGEFLSIWCSSELPPREEDATLDYDAFAACGWVLKASLSSKILCTTMLETNLISSSMPQASY
SHQRTSLFVKVIANLHCFVPSICEGHLDSPGSLVMYNMLDLLALLLTNFNSFCLFSEQERNLFLHKFLECMRLDPAESLPGFTFSYGTQKAATVCRNLRS
LLCHAESLIPNFLNEEDVQLLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03090 sequence-specific DNA binding;... Lus10006938
[exp]
0 1
AT5G51200 EMB3142 EMBRYO DEFECTIVE 3142, Protein... Lus10005726
[exp]
3.5 0.9555
AT2G13680 GLS2, ATGSL02, ... ARABIDOPSIS THALIANA GLUCAN SY... Lus10000832
[exp]
3.9 0.9428
AT3G08850 ATRAPTOR1B, RAP... HEAT repeat ;WD domain, G-beta... Lus10014157
[exp]
5.7 0.9538
AT5G09470 DIC3 dicarboxylate carrier 3 (.1) Lus10024540
[exp]
7.6 0.9539
AT4G03090 sequence-specific DNA binding;... Lus10024745
[exp]
8.0 0.9425
AT4G21190 EMB1417 embryo defective 1417, Pentatr... Lus10027533
[exp]
8.4 0.9151
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Lus10007174
[exp]
8.7 0.9533
AT3G43610 Spc97 / Spc98 family of spindl... Lus10003354
[exp]
9.2 0.9414
AT3G50110 PTEN2B, ATPEN3 phosphatase and TENsin homolog... Lus10010266
[exp]
9.3 0.9259
AT1G64790 ILA ILITYHIA (.1.2) Lus10003102
[exp]
11.4 0.9508

Lus10006938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.