Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 555 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 551 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 528 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 458 / 6e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 385 / 2e-127 RHS12 root hair specific 12 (.1) AT2G26450 378 / 5e-124 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 373 / 8e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 370 / 3e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53840 361 / 8e-118 ATPME1 pectin methylesterase 1 (.1) AT5G53370 357 / 2e-116 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033466 [exp] 729 / 0 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 714 / 0 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037489 [exp] 606 / 0 AT5G27870 480 / 3e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 407 / 3e-135 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 400 / 2e-133 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 400 / 3e-133 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 386 / 2e-127 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033399 [exp] 381 / 9e-126 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10027656 [exp] 367 / 2e-122 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010464 [exp] 628 / 0 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 557 / 0 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 554 / 0 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 455 / 3e-154 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 440 / 1e-148 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 437 / 6e-148 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 435 / 3e-147 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 428 / 2e-144 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 410 / 2e-137 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 390 / 3e-129 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10006940 pacid=23158106 polypeptide=Lus10006940 locus=Lus10006940.g ID=Lus10006940.BGIv1.0 annot-version=v1.0 ATGGGGAAAGAAGAAGAATCAAAGAAAAAGATAGCCATCCTTGGAGTCTCATCCTTCCTCTTGGTAGCCATGGTGATTGCTGTCACAATTGGGATCAACG AGGAGAACGGAAGTCATGGTGGCAGCCACACAAGCAACGAAAATGCAGATGTTTCTACGTCTTCTAAGTTTGTGGCAGCTCTATGCGAACCATCTATTTA CAAGGAAACTTGTAAGAAGAGTCTTGCCAAACCAGCAGAAAATAGCAATGACCCTAAAAAGATTGTCCAGGCAGGGTTCGAGATTGCAGTCAAGTCCCTT AGGGAGTCTCTAAAGAAGTCAAGCACGGTAAAAGAAATAACCAATGACCCCATGGCAAAACGTGGTGTTGAGATCTGTGAGGAATTGTTAGAGACAGCGA TCGAAGACTTGAACAGGTCTGTGGACGAGCTAGGGTCGTTCGACCCAAGGAAGGCCTCCGCACACATTGATAACCTCAAGACGTGGCTTGAGGCCAGTGT CACATTTCAAGAGAATTGCAAGGATGGGTTCGAAAATACTACGGGACCTGCTGGTGAAAAGATGAGGGAGATATTGAATTACTCCGGTGAGGTCACTAGC AATGGGCTTGCCATGGTTGCTGGCCTAGCCAAAATATTTGAAACACTCCATATTGGTACCGCTGGCAGGAGGCTTTTGGTGGCGGATCAAGATGATGATG GTGATTTCCCTTCGTGGGTAAACCAAGGGCAAAGAAAGCTGTTGGCGGCTAACCCAGCCAATGTAAAGGCTGATATGGTTGTCGCTCAAGATGGAAGTGG GCAGTACAAGACTATAATGCAGGCAATTAAGGCAATTCCAAAAAAGCACAAGATTCCTTTTGTGATCAAAGTTAAGGCTGGAGTTTATAAGGAGCAGGTC TTAATCCCCAAATATGCTGCAGGAGTTGTTATGATTGGTGATGGTTCTACCAAGACCAAGGTCACTGGTAGGAAGAACTTCGCCGACGGTGTCCAAACCT CTGACACCGCAACATTTGCTGTAGTGGCACCTGGGTTCATAGCAAGAAACATGGGATTCGAGAACACGGCTGGAGCTGAAGGTCATCAAGCCGTAGCATT CCGATCTAGATCTGATAACTCAGTCCTCTACAATTGCGCCTTTGACGGTTACCAAGACACCCTCTACGCCCAAGCCTATCGCCAATTCTTCCGGGACTGC ACAATCACTGGAACCATCGACTTTGTGTTCGGCACTGCACGAACCGTCCTCCAGAATTGCAAGCTCATCGTGCGTAAGCCCATGCCCAACCAAAAATGTA TCTTGACTGCCGAAGGTAAAAAGGACAAAAACGGTGACTCAGCCATCATCCTCCAGAACTGTCACGTTTCTGCCAGCCCCGAGTACTTCCCTGTGAGACA CACAAACAAGGCCTATCTGGGTAGGCCGTGGAAGGAGTATTCCACCACCATTATCATGAACTCCCAGCTAGACGATCTGATTGACCCAGAAGGTTGGTTG CCTTGGATGGGTGACTTTGGGTTGAACACTTTGTTCTATGCCGAATATAAGAATAAGGGATCAGGTGCAGCCCAAGGCAAGAGAGTTAAGTGGAAGGGAA TTAAGAAGTTGAACGCGGCACAAATTCAAAAGTTTACTCCTGCCAAGCTATACATGGAAGGTGATGCTTGGATTAAGGATTCTGGTGTCCCTTATAATCC TGGCTTATGA
AA sequence Show only first row Show all	>Lus10006940 pacid=23158106 polypeptide=Lus10006940 locus=Lus10006940.g ID=Lus10006940.BGIv1.0 annot-version=v1.0 MGKEEESKKKIAILGVSSFLLVAMVIAVTIGINEENGSHGGSHTSNENADVSTSSKFVAALCEPSIYKETCKKSLAKPAENSNDPKKIVQAGFEIAVKSL RESLKKSSTVKEITNDPMAKRGVEICEELLETAIEDLNRSVDELGSFDPRKASAHIDNLKTWLEASVTFQENCKDGFENTTGPAGEKMREILNYSGEVTS NGLAMVAGLAKIFETLHIGTAGRRLLVADQDDDGDFPSWVNQGQRKLLAANPANVKADMVVAQDGSGQYKTIMQAIKAIPKKHKIPFVIKVKAGVYKEQV LIPKYAAGVVMIGDGSTKTKVTGRKNFADGVQTSDTATFAVVAPGFIARNMGFENTAGAEGHQAVAFRSRSDNSVLYNCAFDGYQDTLYAQAYRQFFRDC TITGTIDFVFGTARTVLQNCKLIVRKPMPNQKCILTAEGKKDKNGDSAIILQNCHVSASPEYFPVRHTNKAYLGRPWKEYSTTIIMNSQLDDLIDPEGWL PWMGDFGLNTLFYAEYKNKGSGAAQGKRVKWKGIKKLNAAQIQKFTPAKLYMEGDAWIKDSGVPYNPGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	0	1
					Lus10035120 [exp]	2.8	0.8898
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	4.5	0.8838
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	5.2	0.8787
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	7.9	0.8068
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	10.5	0.7942
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	13.0	0.7797
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	13.2	0.8179
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	17.9	0.7582
AT5G14230			unknown protein		Lus10022339 [exp]	26.5	0.7226
AT1G73120			unknown protein		Lus10022961 [exp]	28.7	0.8276

Compare expression of checked genes

Lus10006940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.