Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20130 662 / 0 PTAC14 plastid transcriptionally active 14 (.1) AT1G24610 50 / 4e-06 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021783 [exp] 66 / 4e-11 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10034599 [exp] 61 / 1e-09 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155100 [exp] 716 / 0 AT4G20130 679 / 0.0 plastid transcriptionally active 14 (.1) Potri.008G134200 [exp] 55 / 7e-08 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10006942 pacid=23158098 polypeptide=Lus10006942 locus=Lus10006942.g ID=Lus10006942.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCTTTCCCCTCTATCACCTCACCCTCTCATTCCCGGTTTCGCAGGATATGGAGTGTTTCCTGCATCATCCGCAGCAGATATGGCGGACGG CAAGCCCAAGACACTCATTCTCCAGAGTTGTACGCACCCATAAAGCCGTTAAGGATTCTGCAGTCGAAATGCCTGCCTTTCCCCTTTTTCAACCTCCTCA GCTGGAAGATCCTACCTCCCACTTGGAATCAGTAGACCCTGATTTCTACAAAATAGGTTATGTTCGGAGCATGCGTGCTTATGGTATTGAATTTAAACAA GGCCCCGACGGCTTCGGAGTTTATGCTTCCAAAGATGTACAACCGCTTCGTCGCCCTAGGATGATCATGGAGATCCCTTTAGAGCTGATGCTCACAATTA GCAAGAAGCACCCTTGGATGTTCTTCCCTGATATCATTCCGCTTGGTCACCCCATATTTGATATTATTAACTCGACCCATCCTGAGACAGATTGGGACCT GAGATTGGCATGTCTTCTTTTGTATTCCTTTGATGTCAAGGATAACTTCTGGCAGCTCTACGGTGACTTCTTACCTAGCAAAGAAGAGTGCACTAGCTTA CTCATGGCTTCTGAGGATGACCTTTTGGAGCTCCAGGACGAGGATCTTGCATCAACCATGAGAAAACAGAAATCTCGAGCTATGATATTTTGGGAAAAGA ACTGGCACAATGGTGTTCCACTCAAAATAAAGCGTCTTGCCAATGAAGCTGAGAGATTCATTTGGGCACTTGCCATGGCACAATCACGGTGCATTAATCT GCATATGAGGGTTGGTGCTCTTGAACAAGAGGCAAACATGTTTGTTCCTTATGCTGATATGTTAAGCCATTCACCAGAGCCAAACTGCTTTTTTCATTGG CGATTCAAAGATCGAATGCTTGAAGTTATGATAAACGCAGGCCAAGAGATCAGGAAAGGGGAGGAGATGACTGTTAACTACATGGATGGGCAGCAGAATA AAATGTACATGGAAAGATATGGCTTCTCATCGCCCGTGAATCCTTGGGATGTGATTCCGTTCTCTGGCAATTCCCGCATTCATTTGGAATCTTTCTTGTC GGTCTTCAACATATCGGGGCTTCCTGAGGAATATTACCATAATTATGAGGTAGCCGGAAGAGGGGACAGTTTCGTGGATGGAGCCGTCCTAGCAGCAGCA AGAACACTGCCAACTTGGTCAGAAGGAGACGTGCCACCACTTCCCACCGCAGAACGGAGAGCTGTGAGGGAGTTGAAAGAAGAGTGCCAGAAGATGCTTG CTCAATACCCAACAACTTCTAAGGAAGACCAGAAAATCCTAGATTCAATGGAGGAACCCAGGAGGACACTTGAGGCAGCAGTCATGTATAGAATGCACCG GAAAATGTTGATAGAGAAGGTCATCCAGGCACTAGACATGTATATGGATCGCTTGTTGTTTTAA
AA sequence Show only first row Show all	>Lus10006942 pacid=23158098 polypeptide=Lus10006942 locus=Lus10006942.g ID=Lus10006942.BGIv1.0 annot-version=v1.0 MASSFPLYHLTLSFPVSQDMECFLHHPQQIWRTASPRHSFSRVVRTHKAVKDSAVEMPAFPLFQPPQLEDPTSHLESVDPDFYKIGYVRSMRAYGIEFKQ GPDGFGVYASKDVQPLRRPRMIMEIPLELMLTISKKHPWMFFPDIIPLGHPIFDIINSTHPETDWDLRLACLLLYSFDVKDNFWQLYGDFLPSKEECTSL LMASEDDLLELQDEDLASTMRKQKSRAMIFWEKNWHNGVPLKIKRLANEAERFIWALAMAQSRCINLHMRVGALEQEANMFVPYADMLSHSPEPNCFFHW RFKDRMLEVMINAGQEIRKGEEMTVNYMDGQQNKMYMERYGFSSPVNPWDVIPFSGNSRIHLESFLSVFNISGLPEEYYHNYEVAGRGDSFVDGAVLAAA RTLPTWSEGDVPPLPTAERRAVRELKEECQKMLAQYPTTSKEDQKILDSMEEPRRTLEAAVMYRMHRKMLIEKVIQALDMYMDRLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	0	1
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	1.0	0.9680
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	2.8	0.9581
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	5.5	0.9485
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	5.7	0.9334
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	6.3	0.9479
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	6.5	0.9166
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	6.9	0.9275
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	8.1	0.9229
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	8.5	0.9388
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	10.5	0.9438

Compare expression of checked genes

Lus10006942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.