Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44350 411 / 7e-142 CSY4, ATCS CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2) AT3G60100 372 / 1e-126 CSY5 citrate synthase 5 (.1) AT2G11270 53 / 5e-09 citrate synthase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019688 [exp] 449 / 5e-157 AT2G44350 784 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G230500 [exp] 431 / 8e-150 AT2G44350 792 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [flax] [poplar] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006943 pacid=23158100 polypeptide=Lus10006943 locus=Lus10006943.g ID=Lus10006943.BGIv1.0 annot-version=v1.0 ATGGAAGCTAGTGCATCCCATTTTAATCATCCCTCTCTTCATCCTTTTCTCACTTCTCTTGAAGAAGTGCTCGTAGCTGTCGCTGCTGCCGTAGATGTAC TCTCCGCATTGGAGAGGAACTACGACCTCCACTCCCTGTTACAAGAGTTGATCCCAGAACAACAGGAACGCCTTCAAAAAATTAGGACAGACTATGGAAA AGTTCAACTGGGAAACATCACAACTGACATGGTGATTGGTGGGATGAGAGGAATGACTGGATTGCTATGGGAAACCTCACTGCTTGATCCCAAAGAGGGA ATTCGCTTCCGGGGTCTTTCAATTCCTGAATGTCAGAAGGTATTGCCAACTGCAAAGCCTGATCGAGAACCATTACCTGAGGGTCTTCTTTGGCTTCTTC TCACCGGAAAGGTGCCAAGCCAGGAGCAAGTGAGTGCTTTATCAAAGGAATTGCGTGATCATGCCAATGTCCCAGATTATGTCTTCAAGGCCATTGATGC TCTCCCTGACTCAGCTCATCCAATGACTCAGTTTACAACTGGTGTCATGGCGCTTCAGCACATGAGAATACAGTTGTGGATGATGGTTAATCTTGATATT ACCTATTCAGGGTTGTTGACGTTCCCAAATTCTCTCTTCCAAGTTCAGAGTGAGTTTCAGAAAGCATATGACCAGGGTATTCACAAATCAAAGTACTGGG AGCCAACATATGAAGATTCTCTTAATCTAATTGCTCGTCTGCCAGCCGTAGCTTCATATGTTTATCGAAGTGACCATGAAGGTGGTAACGTGAGTGCACA CACTGGACATCTGGTTGTCAGTGCACTTTCAGATCCTTATCTTTCATTTGCAGCAGCATTAAATGGTTTAGCGGGGCCACTTCATGGCTTGGCTAATCAG GAAGTCTTGCTATGGATCAAATCTGTTGTCGAGGAGTGTGGGGAAAACATTAATACCAAGCAATTAAAAAACTACGTCTGGAAGACATTAAACAGTGGAA AGGTTTCTAAGCGCTACGATGTTGTGCCTCCAATTATTGCTCAGCTAGGCAAGGCAAGCCAAAAAGTGTTACGATGGATTGGCTTGAAAGTCGGTGCAAA GAAAGCTGCTGCAGCATGA
AA sequence Show only first row Show all	>Lus10006943 pacid=23158100 polypeptide=Lus10006943 locus=Lus10006943.g ID=Lus10006943.BGIv1.0 annot-version=v1.0 MEASASHFNHPSLHPFLTSLEEVLVAVAAAVDVLSALERNYDLHSLLQELIPEQQERLQKIRTDYGKVQLGNITTDMVIGGMRGMTGLLWETSLLDPKEG IRFRGLSIPECQKVLPTAKPDREPLPEGLLWLLLTGKVPSQEQVSALSKELRDHANVPDYVFKAIDALPDSAHPMTQFTTGVMALQHMRIQLWMMVNLDI TYSGLLTFPNSLFQVQSEFQKAYDQGIHKSKYWEPTYEDSLNLIARLPAVASYVYRSDHEGGNVSAHTGHLVVSALSDPYLSFAAALNGLAGPLHGLANQ EVLLWIKSVVEECGENINTKQLKNYVWKTLNSGKVSKRYDVVPPIIAQLGKASQKVLRWIGLKVGAKKAAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	0	1
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	1.0	1.0000
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	9.7	0.9991
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	13.6	0.9997
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	14.3	0.9981
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009469 [exp]	16.6	0.9997
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	17.1	0.9986
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	17.7	0.9776
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	19.2	0.9996
					Lus10003843 [exp]	21.4	0.9996
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	22.0	0.9763

Compare expression of checked genes

Lus10006943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.