Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30900 852 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 817 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 757 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT2G14740 734 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 731 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT3G52850 702 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 696 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020967 [exp] 738 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10012366 [exp] 721 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10022737 [exp] 708 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 703 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025136 [exp] 696 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10002130 [exp] 692 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10025220 [exp] 518 / 8e-179 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025361 [exp] 309 / 2e-98 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155200 [exp] 916 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 912 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G294400 [exp] 737 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.009G088900 [exp] 728 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.016G137300 [exp] 725 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.006G108800 [exp] 712 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.016G137350 [exp] 163 / 3e-47 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 57 / 8e-10 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.004G192700 [exp] 46 / 6e-05 AT1G21270 464 / 4e-154 wall-associated kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006944 pacid=23158096 polypeptide=Lus10006944 locus=Lus10006944.g ID=Lus10006944.BGIv1.0 annot-version=v1.0 ATGTTTGTAGTACTAGTAGCAACAACATTTCTGTGGGATTTCGGGGTGAGCCGGTTCGTAGTGGAGAAGAGCAGCATAAGCGTGCTGTCACCGCTGAAGT TGCGATCAAAGCATGACAGCGCCATTGGAAACTTCGGGACCCCTGATTATGGTGGCTACATGGTTGGATCAGTGGTTGGATCGTCTTCCCTTGGCTGCCA GCCCTTTGAAGGCCATAAGCCCTTTAAACTCAATCCTGCTCGCCCCACCATTCTACTGGTGGATCGTGGAGACTGCTATTTCGCACTCAAAGTGTGGAAT GCGCAGCAAGCAGGAGCAGCAGCAGTTCTAGTTGCGGACACCGTAGACGAGCCTCTTATAACAATGGATTCCCCTGAAGCCAGCAGCAGCGACGCCGGAG ATGGCTACGTTGAAAAAATCAGTATTCCCTCGGCTCTAATTGACAAGTCATTCAGCGACACACTAAAGCAAGCCTTGAAAGAAGACAAAGAAGAAGTTGT GGTCAAAATGGACTGGCGGGAGTCAATGCCTCATCCTGACCAGAGAGTGGAGTATGAGCTTTGGACCAACAGCAACGACGAATGTGGGGTTAGGTGCGAT GAGCAAATGGATTTCGTTAAAAACTTCAAAGGTCACGCTCAAATCCTTGAGAGAGGAGGATACACTTTGTTCACTCCGCATTACATCACTTGGTATTGTC CACCTGCTTTTGTGCTCACCGCCCAGTGCAAGTCTCAGTGCATCAACCACGGCAGGTATTGTGCTCCTGATCCGGACCAGGATTTGGGGCAAGGGTATCA AGGAAAGGATGTTGTGTTTGAGAATCTTAGGCAGCTCTGTGTTCATCGAGTTTTGAACGAGAGCGGGGGGCGGTCGTGGGTTTGGTGGGACTATGTAACT GATTTCCACATTAGGTGTTCGATGAAGAAGAACAAGTATAGCAAAGAGTGTGCTGATGGTGTTATGAAATCACTTGGTTTGCCAGTTGATAAGATTAAGA AATGTATGGGTAACCCTGAGGCTGATGTCGAGAATCAAGTGTTGAAGATAGAGCAGGAACGCCAGATTGGGCAAGGAGGCCGCGGAGATGTCACCATCTT ACCAACTCTTGTCATAAACAATGTTCAGTACCGAGGAAAATTGGAGAGAACCGCTGTGCTGAAAGCCATATGTGCTGGATTTAAAGAAACTACAGACCCA CCAATCTGTTTAAGTCCAGGTCTGGAAACTAATGAGTGTCTTGAGAGGAATGGAGGTTGCTGGCAGGACACACAATCCAACTTGACTGCTTGCAAGGACA CGTTTAGAGGAAGAGTTTGCGAGTGTCCGGTTGCGAATGGTGTTCAATACAAAGGAGATGGATACTTATCTTGTCAAGGGTTTGGCCCTGGAAGATGTGC AATCAACAATGGAGGATGTTGGTCAGAATCGAGACAAGGATTGAGTTTCTCAGCTTGCTCAGACTCCCATTTGTCAGGCTGCCACTGTCCACCGGGTTTC CTTGGGGATGGTAATCACTGTGAAGATGTGGACGAATGCAAGGAAGGCAGTGCTTGTCAGTGTGATGATTGCTCCTGTAAGGATACTTGGGGTGGATATG ACTGCAAATGCAAAGCTGGCCTCCTTTACATGAAGGAGCTTGATACTTGTATCGAGAGAAGTGGATCTGGAATGGGATGGTTCCTCATGTTTGGGATCCT AGCAGTGTTGGCCGGAGTCAGTGTTGCTGCTTATATATTCTACAAATACAGACTAAGGTCATATATGGACTCGGAGATAATGGCGATCATGTCACAATAC ATGCCACTTGACAACAACGATAATGGTAATAATGCTAACCGTGAAGCTCAGCCCCTGCGACACAATACATCAGTATAG
AA sequence Show only first row Show all	>Lus10006944 pacid=23158096 polypeptide=Lus10006944 locus=Lus10006944.g ID=Lus10006944.BGIv1.0 annot-version=v1.0 MFVVLVATTFLWDFGVSRFVVEKSSISVLSPLKLRSKHDSAIGNFGTPDYGGYMVGSVVGSSSLGCQPFEGHKPFKLNPARPTILLVDRGDCYFALKVWN AQQAGAAAVLVADTVDEPLITMDSPEASSSDAGDGYVEKISIPSALIDKSFSDTLKQALKEDKEEVVVKMDWRESMPHPDQRVEYELWTNSNDECGVRCD EQMDFVKNFKGHAQILERGGYTLFTPHYITWYCPPAFVLTAQCKSQCINHGRYCAPDPDQDLGQGYQGKDVVFENLRQLCVHRVLNESGGRSWVWWDYVT DFHIRCSMKKNKYSKECADGVMKSLGLPVDKIKKCMGNPEADVENQVLKIEQERQIGQGGRGDVTILPTLVINNVQYRGKLERTAVLKAICAGFKETTDP PICLSPGLETNECLERNGGCWQDTQSNLTACKDTFRGRVCECPVANGVQYKGDGYLSCQGFGPGRCAINNGGCWSESRQGLSFSACSDSHLSGCHCPPGF LGDGNHCEDVDECKEGSACQCDDCSCKDTWGGYDCKCKAGLLYMKELDTCIERSGSGMGWFLMFGILAVLAGVSVAAYIFYKYRLRSYMDSEIMAIMSQY MPLDNNDNGNNANREAQPLRHNTSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	0	1
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	1.0	0.9879
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	1.4	0.9863
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	2.4	0.9782
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	4.6	0.9735
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	4.9	0.9761
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	5.5	0.9726
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	5.7	0.9734
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	6.0	0.9745
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	6.0	0.9734
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	8.5	0.9613

Compare expression of checked genes

Lus10006944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.