Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 274 / 3e-85 disease resistance family protein / LRR family protein (.1) AT1G74180 114 / 6e-28 AtRLP14 receptor like protein 14 (.1) AT1G74190 111 / 7e-27 AtRLP15 receptor like protein 15 (.1) AT3G24240 110 / 1e-26 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 104 / 1e-24 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G74170 103 / 3e-24 AtRLP13 receptor like protein 13 (.1) AT5G07180 99 / 6e-23 ERL2 ERECTA-like 2 (.1) AT4G20140 98 / 2e-22 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G08590 97 / 4e-22 Leucine-rich receptor-like protein kinase family protein (.1) AT2G26330 97 / 6e-22 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024737 [exp] 505 / 7e-174 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 231 / 1e-69 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10041266 [exp] 138 / 9e-38 AT2G34930 161 / 1e-43 disease resistance family protein / LRR family protein (.1) Lus10039529 [exp] 129 / 7e-33 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 123 / 5e-31 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 123 / 5e-31 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 120 / 7e-30 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 120 / 8e-30 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 119 / 9e-30 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107000 [exp] 176 / 2e-49 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 172 / 6e-48 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 149 / 4e-40 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 132 / 3e-34 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 121 / 2e-30 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 121 / 3e-30 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 120 / 3e-30 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 120 / 6e-30 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 116 / 1e-28 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.014G147300 [exp] 112 / 2e-27 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006945 pacid=23158107 polypeptide=Lus10006945 locus=Lus10006945.g ID=Lus10006945.BGIv1.0 annot-version=v1.0 ATGAATACAAGCAATGATGGTGGAGATTGGCTCCTTGCTGTTAATATACTTCCATCATTGGTGGAGTTGCATCTTCATTACTGTCACCTCCAAGTCCTTC CCCAATCACTTCCCATCATTAACTTTATTTCCCGTTCTGTCCTTGATTTGTCTGAAAACTCTTTCAATTCTCCAATTCCACCATGGCTGTTCAAACTCAC CAGCCTCAAGGAACTCTATCTCAGATGGAACTTCCTCAATGGTCCTTTCCCTAGAGAGCTTTCCTTGCTTAAGTCCCTGCAAGTTCTTGATCTGTCCAAC AATTTGGAGTTTGGAGGTCAGGTTCCTGCAGGAATATTTGCAAGTCTGACAAAGTTTAAGATGTTGGACCTTTCAGCCAATAACTTGAAAGGTGGAATCC ACGATTTCCTGCAAGGATTTGCAGACAACAGCTTGATGTTTCTGGATTTGAGCTCCAATTCGCTGGAAGGTGAAATTCCTGACTCGTTAGGAGTGCTTCA GAACTTGCAAAGACTTGATCTGTCTAGCAATGGATTCAGTGGCTCAATCCCAAATTCTATTGGAAAGATGTCGCCTTTGAAGTACTTGGATCTTTCTTAC AACAACATGGATAGGAGTATCCCGGAGAGTTTCGGGGAACTTTCGGAGCTGGTTGATGTGAACTTATTAACAAACTCTTTGAGAGGCGTTATCAGACAAG CTCACTTAGTGAACCTCCGAAGCCTGAAGACCATACGGCTAGCAACGGATCCAAATCGTTCTTTGATCTTTGATGTTCCAGCCAAGTGGGTTCCTCCCTT CAAGCTCACATCCATTCAACTCGAGAACTGCTTCGTTGGTCCTTCCTTTCCTACGTGGCCCAGTGTTCAGAATGAACACTTCTATCTCTCTCAGAAATGT TGGGATTTCAGACACCATACCGAGCCAATGGTTCTCAAGCTTACCTGCTGA
AA sequence Show only first row Show all	>Lus10006945 pacid=23158107 polypeptide=Lus10006945 locus=Lus10006945.g ID=Lus10006945.BGIv1.0 annot-version=v1.0 MNTSNDGGDWLLAVNILPSLVELHLHYCHLQVLPQSLPIINFISRSVLDLSENSFNSPIPPWLFKLTSLKELYLRWNFLNGPFPRELSLLKSLQVLDLSN NLEFGGQVPAGIFASLTKFKMLDLSANNLKGGIHDFLQGFADNSLMFLDLSSNSLEGEIPDSLGVLQNLQRLDLSSNGFSGSIPNSIGKMSPLKYLDLSY NNMDRSIPESFGELSELVDVNLLTNSLRGVIRQAHLVNLRSLKTIRLATDPNRSLIFDVPAKWVPPFKLTSIQLENCFVGPSFPTWPSVQNEHFYLSQKC WDFRHHTEPMVLKLTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	4.1	0.9228
AT2G34930			disease resistance family prot...		Lus10006946 [exp]	4.2	0.8525
					Lus10022721 [exp]	4.2	0.9159
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	4.2	0.9167
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	6.7	0.9101
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	6.9	0.9103
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	8.1	0.9036
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	9.9	0.8822
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	10.2	0.8874
AT5G10530			Concanavalin A-like lectin pro...		Lus10033782 [exp]	13.4	0.8231

Compare expression of checked genes

Lus10006945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.