Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 589 / 0 disease resistance family protein / LRR family protein (.1) AT4G04220 296 / 2e-88 AtRLP46 receptor like protein 46 (.1) AT1G74190 278 / 2e-80 AtRLP15 receptor like protein 15 (.1) AT1G71400 274 / 1e-79 AtRLP12 receptor like protein 12 (.1) AT1G74170 272 / 4e-78 AtRLP13 receptor like protein 13 (.1) AT1G74180 263 / 7e-75 AtRLP14 receptor like protein 14 (.1) AT5G49290 256 / 5e-73 ATRLP56 receptor like protein 56 (.1) AT5G25910 249 / 3e-71 AtRLP52 receptor like protein 52 (.1) AT1G47890 247 / 2e-69 AtRLP7 receptor like protein 7 (.1) AT3G05650 241 / 6e-68 AtRLP32 receptor like protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024737 [exp] 637 / 0 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10024736 [exp] 500 / 1e-172 AT2G34930 195 / 8e-56 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 431 / 7e-138 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 430 / 2e-136 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 427 / 1e-135 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 426 / 4e-135 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 427 / 5e-135 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 425 / 6e-135 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 423 / 5e-134 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107000 [exp] 513 / 2e-168 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 512 / 4e-168 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 491 / 8e-160 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 444 / 9e-143 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 444 / 2e-142 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 444 / 2e-142 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 439 / 2e-140 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 413 / 2e-130 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 407 / 1e-126 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 399 / 6e-126 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006948 pacid=23158101 polypeptide=Lus10006948 locus=Lus10006948.g ID=Lus10006948.BGIv1.0 annot-version=v1.0 ATGGAAATCCAGAATCCATCTTGGCTCTCTGGTCTCTCGTCGTTGAAGCACCTCAATCTCGGCCTTATAACAATCAGCAGCGTTAATGCGCAATGGCTTC ATGCCGTTAACATGATTCCTTCTTTGCTTGAGTTGCATCTCTCTTCTTGTGGCCTTGAAGATATGGAAGTCACATTGTCATTTCTCAACTTCACTTCACT ATCAGTTCTTGATCTTTCCCAGAACTCTTTCAATTCTTCAATTCCTGCATGGCTCTCTAATCTGACTAGTCTCACTAAACTAGATCTAAACACAAATTCT TTTAGTGGTTCCATCACTATAGACTTTGGCAAGTTAGCATCACTTGAGGATCTACATTTTTCTCTGAACAACTTCAGTGGTCCGATTCCTCTCTCTTTAG GAAACCTTTGCAAGCTAAAGAAGTTGAGACTTGCAGCAGCCACATTCAGTGGCGATATCTCTGAATTTCTCAACTCCTTTTCTGGGTGTTCTACTGTGAG CTTAGAAATGCTTGATCTCAACTCCAACAACCTCATGGGAAAAATACCTGATTCAGTTGGGATTCTCAAGAATATGAAACATCTGGACCTGGCCTACAAC TCTCTTTGGGGTTCCGTTCCAGCAACAATTGGAAACTTGTCCGCCTTAGAAGTCCTGTACCTACATTCGAACCAGATGAATGGCAGCATCCCTGAAAGTT TTTGCCAACTCTCAAAGCTAAGAGATTTGAACCTTATTGCAAATTCATGGCAAGGCATTATAACAGAAGTTCACTTGTTGAACCTCACTAGCTTGGAAAG CTTGATGCTTTCTACTAGCCTACCAAGCTCCTTAGTATTCAAGGTGGATCCTCTCTGGGTTCCTCCTTTTCGACTCGATTACATCCAAATCGAGGATTGT ACGGTTGGTCCTCTTTTTTCTACTTGGCTTCAAGTACAAAATCGTCTGACACATGTCAAACTACAAAATGTTGGTATTTCTGACACCATACCAGAGGAAT GGTTTTCACAGTTGTCTTCTGAACTCATCGTCCTAGACCTGTCAGATAATCAGATCAGGGGGAAGCTTCCTGTCGAATTGTATGGTCCAAAATTGGAAAA TGTAGATCTTGCATCCAATCGCTTTGAAGGTTCTGTCCCACGTTGGTCTACTAATGCGACTCAATTTTACCTTCACGAGAACTTATTCTCAGGCCCAATT CCTTGCAACATTGGCACACTGATGCCAAGACTGCGTAACCTCCACCTATCTGATAACAGTCTAAATGGAAGCATTCCATCATCCATATGCAAGATGACAG ACTTGCAAGTTCTCTCTCTGAGGAACAATCACCTTTCAGGAGATCTCCTTGAATGCTGGGAACAGTTATCAGCCTTGTGGGTTGTGGATGTCTCGAACAA CAATTTATCAGGTAAGATTCCTAGCTCAATGGGACTGCTGGGAACACTTGGAATGCTGTTGTTGAGCGAAAACAATCTGGTTGGAGAAATCCCTTCCTCA TTGCAGAATTTATCAGCCTTGACAAGCATTGATCTGGGAGAAAATCAGCTCTCAGGGGAAGTACCTCGCTGGATCGGAGAAAAGTTGTCAGCCACCTTCG TGCTTCGCCTTCGATCAAACAAATTCCACGGCCAGGTCCCAGAATCACTGTGCAACCTCCAGCTACTTCATTTCTTAGACCTATCAAACAACAACCTTTC AGGTGGGATTCCCAAATGCCTGCACAACCTTACTTCCATGGTGTATGGAAACAGCAGTGAGTTGTACTACCGAGACTTCCAATTCCGTATGGCCTACTTC AAAGAAGAAACCACAGTGGTGACCAAAGGGAGAGCATACGATTACAACAGAAATATAGCTCTGCTCAACGTTATTGACTTGTCTGAGAACAACTTGACTG GTCCGATTCCCGACGAGATGACAAAGCTCCTAGCCGTCCGGGTCTTGAATCTATCCAGCAACCATATAAGTGGAATCATTCCAGAGAAACTTGGGGGTTT GAAAGACCTGGAAACATTGGACTTGTCCCATAACCAGCTCTCAGGGGAGATCCCTGCAAGTTTGTCAAGTTTGACATTTTTGACAAATTTAGTCTTGTCA TACAACAACTTTTCAGGGAAGATACCAACGGGAAGTCAGCTCCAAACATTTGATGAATCTAGCTACGAGGGAAACCCGTTTCTCTGTGGATTTCCTTCCA CGGTTAACTGCACCGTGGATAGAACAACAACCCCATGTGTTGCAGAACCAGAAGATGAAACTGACAAGGACGAAATCTTCGAACTGGGTACAGGATTGTA TGTTAGCATTGCGTTGGGTTTTCTGATTGGGTTCTTGGGACTCTGTGTAACTTTACTGAGAAAAGAGTTCATGCAAAAAGAAGCCAGCGAATGGTAG
AA sequence Show only first row Show all	>Lus10006948 pacid=23158101 polypeptide=Lus10006948 locus=Lus10006948.g ID=Lus10006948.BGIv1.0 annot-version=v1.0 MEIQNPSWLSGLSSLKHLNLGLITISSVNAQWLHAVNMIPSLLELHLSSCGLEDMEVTLSFLNFTSLSVLDLSQNSFNSSIPAWLSNLTSLTKLDLNTNS FSGSITIDFGKLASLEDLHFSLNNFSGPIPLSLGNLCKLKKLRLAAATFSGDISEFLNSFSGCSTVSLEMLDLNSNNLMGKIPDSVGILKNMKHLDLAYN SLWGSVPATIGNLSALEVLYLHSNQMNGSIPESFCQLSKLRDLNLIANSWQGIITEVHLLNLTSLESLMLSTSLPSSLVFKVDPLWVPPFRLDYIQIEDC TVGPLFSTWLQVQNRLTHVKLQNVGISDTIPEEWFSQLSSELIVLDLSDNQIRGKLPVELYGPKLENVDLASNRFEGSVPRWSTNATQFYLHENLFSGPI PCNIGTLMPRLRNLHLSDNSLNGSIPSSICKMTDLQVLSLRNNHLSGDLLECWEQLSALWVVDVSNNNLSGKIPSSMGLLGTLGMLLLSENNLVGEIPSS LQNLSALTSIDLGENQLSGEVPRWIGEKLSATFVLRLRSNKFHGQVPESLCNLQLLHFLDLSNNNLSGGIPKCLHNLTSMVYGNSSELYYRDFQFRMAYF KEETTVVTKGRAYDYNRNIALLNVIDLSENNLTGPIPDEMTKLLAVRVLNLSSNHISGIIPEKLGGLKDLETLDLSHNQLSGEIPASLSSLTFLTNLVLS YNNFSGKIPTGSQLQTFDESSYEGNPFLCGFPSTVNCTVDRTTTPCVAEPEDETDKDEIFELGTGLYVSIALGFLIGFLGLCVTLLRKEFMQKEASEW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	0	1
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10026200 [exp]	2.4	0.9203
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	2.4	0.9492
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	4.7	0.9307
					Lus10010684 [exp]	7.1	0.9124
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	7.3	0.9260
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	7.7	0.9258
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016659 [exp]	7.7	0.9012
AT1G27385			unknown protein		Lus10015781 [exp]	9.9	0.9063
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	10.0	0.9258
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10039598 [exp]	11.3	0.8748

Compare expression of checked genes

Lus10006948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.