Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45680 175 / 2e-55 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G39710 103 / 2e-27 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT2G43560 65 / 1e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 59 / 4e-11 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 59 / 8e-11 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT4G25340 60 / 2e-10 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT3G10060 57 / 5e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 56 / 5e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 55 / 8e-09 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G60370 51 / 9e-08 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024735 [exp] 213 / 9e-71 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10016811 [exp] 100 / 8e-26 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10022507 [exp] 100 / 9e-26 AT4G39710 270 / 8e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10031121 [exp] 69 / 2e-13 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 69 / 2e-13 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10025889 [exp] 61 / 1e-11 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10038215 [exp] 61 / 1e-10 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008359 [exp] 59 / 2e-10 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027115 [exp] 59 / 3e-10 AT2G43560 276 / 5e-94 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G075500 [exp] 209 / 2e-68 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.005G079700 [exp] 112 / 1e-30 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.007G087401 [exp] 72 / 5e-16 AT4G39710 158 / 1e-49 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.012G129200 [exp] 68 / 2e-13 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G248200 [exp] 58 / 9e-11 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.007G134600 [exp] 58 / 4e-10 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 59 / 5e-10 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.017G017500 [exp] 57 / 1e-09 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 56 / 4e-09 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G096600 [exp] 53 / 2e-08 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10006949 pacid=23158089 polypeptide=Lus10006949 locus=Lus10006949.g ID=Lus10006949.BGIv1.0 annot-version=v1.0 ATGAACTTGTTGGCATTTTCGGTTGGGCACTACACACCCAAGAGGAAACTGAGCACAAAGGCAATGGTGAAGAAGGCTGAAACAACCGAATATTCTTCAT CAACTGTAAAGTACTCGGCAAAGGAAGGGTTCCCCCAGTTAAAGCAAGACCCAACTTTGTTGGGCAGGAGAGAAACACTGGGGCTGGGTTTCTGCGTAGC CCTCCTTGACGTTATAATATTTCAACAACAATCAACAACAGGAGCAGCTGAAACTGTTCCATGTGAATTGACTTCGACTCCTTCGGGCCTTTCCTTCTGT GACAAAGTTGTGGGAAGTGGCGCGGAGGCTGTGAAGGGACAACTGATTAAGGCGCATTACGTTGGGAAACTGGAAAATGGGCAAGTTTTTGATAGCAGCT ACAATCGTGGGAAGCCTCTCACATTTCGAGTAGGAGTTGGTGAGGTGATCAAAGGTTGGGACCAAGGAATCATTGGGGGTGATGGAATACCTTCAATGCA AGCTGGAGGAAAGCGTGTATTGAAGATCCCACCAGAACTTGGATATGGTATTAGAGGGGCTGGCTGCAGAGGAGGTTCATGTTTAATTCCTCCAAACTCG GTACTTGTGTTCGATGTGGAATTCATTGGCAAGGCATGA
AA sequence Show only first row Show all	>Lus10006949 pacid=23158089 polypeptide=Lus10006949 locus=Lus10006949.g ID=Lus10006949.BGIv1.0 annot-version=v1.0 MNLLAFSVGHYTPKRKLSTKAMVKKAETTEYSSSTVKYSAKEGFPQLKQDPTLLGRRETLGLGFCVALLDVIIFQQQSTTGAAETVPCELTSTPSGLSFC DKVVGSGAEAVKGQLIKAHYVGKLENGQVFDSSYNRGKPLTFRVGVGEVIKGWDQGIIGGDGIPSMQAGGKRVLKIPPELGYGIRGAGCRGGSCLIPPNS VLVFDVEFIGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	0	1
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	1.0	0.9694
AT4G24750			Rhodanese/Cell cycle control p...		Lus10043306 [exp]	2.4	0.9641
AT4G27390			unknown protein		Lus10038584 [exp]	3.2	0.9610
					Lus10005720 [exp]	3.5	0.9659
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	3.9	0.9589
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	4.2	0.9679
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	4.2	0.9574
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	4.2	0.9660
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	4.5	0.9643
AT5G53490			Tetratricopeptide repeat (TPR)...		Lus10007788 [exp]	5.7	0.9608

Compare expression of checked genes

Lus10006949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.