Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57150 208 / 1e-67 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29930 187 / 5e-59 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G16910 82 / 7e-18 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G28160 75 / 1e-15 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G46760 74 / 3e-15 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G01260 73 / 1e-14 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G12860 71 / 5e-14 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 70 / 1e-13 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT3G26744 69 / 1e-13 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G32640 67 / 6e-13 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025463 [exp] 99 / 1e-23 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10030880 [exp] 87 / 7e-20 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 84 / 9e-19 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016151 [exp] 80 / 2e-17 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Lus10019247 [exp] 73 / 5e-15 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 72 / 1e-14 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 70 / 1e-13 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10000037 [exp] 68 / 1e-13 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10007618 [exp] 67 / 1e-13 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G141800 [exp] 305 / 1e-105 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 305 / 1e-105 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141600 [exp] 210 / 2e-68 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141500 [exp] 207 / 3e-67 AT5G57150 214 / 1e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G141700 [exp] 204 / 3e-66 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074600 [exp] 193 / 2e-61 AT5G57150 168 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074800 [exp] 187 / 3e-59 AT5G57150 181 / 1e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074700 [exp] 183 / 1e-57 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G136300 [exp] 88 / 7e-20 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 87 / 2e-19 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006951 pacid=23165416 polypeptide=Lus10006951 locus=Lus10006951.g ID=Lus10006951.BGIv1.0 annot-version=v1.0 ATGGAGCCGATCGACAACATCGGAGAAGAATACCACAACTACTGGGAAACTAAGATGTTCCTCCACAACGAAGAGCTCGACAGCTGGGCCATGGACGAGG CCTTCTCCGGCTACTACGACTCCAGCTCCCCGGACGGAGCAGCCTCGTCGGCGGCATCCAAGAACATCGTCTCCGAGCGCAACCGCCGCAAGAAGCTCAA CGAACGCCTCTTCGCCCTCCGCGCCGTCGTCCCCAATATTACCAAGATGGACAAGGCGTCGATTATCAAAGACGCGATCAATTACATCCAAGAGCTCCAC GAGCAGGAGCGGCGGATTCAGGCGGAGATAGCCGAGCTGGAGCTCGAATCCGGCGGATTCGGAGGTGGCCGGAAGAAGAAGTCGTTGAAGAAAGGGATTT ACGAAATGGACCTGGAGGAATTGCCTCTGCTGCTGAGGTCGAAGAAGAAGAAGGTCGACGATCGATTCTACGATTCGTCTCCGATTGAGCTTCTAGAACT TCGGGTGGCGTACATGGGGGAGAAGACGGTACTGGTGAGCTTGACGTGCGGGAAGAGATCGGACACGATGGTGAGACTGTGCGAGATGTTTGAATCGTTG AAGCTCAAAGTTATCACGGCGAATATCACCACGGTCGCCGGCCGGCTTCTCAAGACTGTCTTTGTTGAGGTTTAA
AA sequence Show only first row Show all	>Lus10006951 pacid=23165416 polypeptide=Lus10006951 locus=Lus10006951.g ID=Lus10006951.BGIv1.0 annot-version=v1.0 MEPIDNIGEEYHNYWETKMFLHNEELDSWAMDEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNITKMDKASIIKDAINYIQELH EQERRIQAEIAELELESGGFGGGRKKKSLKKGIYEMDLEELPLLLRSKKKKVDDRFYDSSPIELLELRVAYMGEKTVLVSLTCGKRSDTMVRLCEMFESL KLKVITANITTVAGRLLKTVFVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10006951 [exp]	0	1
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	2.2	0.9138
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029838 [exp]	4.9	0.9115
AT3G07425			unknown protein		Lus10009587 [exp]	5.4	0.9184
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	8.5	0.9165
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	8.7	0.9156
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	14.4	0.9147
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	18.0	0.9114
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	20.2	0.9122
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	24.4	0.9022
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	26.6	0.9077

Compare expression of checked genes

Lus10006951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.