Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19160 503 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 480 / 8e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 447 / 3e-157 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G25870 444 / 6e-156 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 428 / 1e-149 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 225 / 8e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 224 / 1e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 223 / 4e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 220 / 4e-68 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 218 / 4e-67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025464 [exp] 711 / 0 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 446 / 3e-156 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10020159 [exp] 446 / 4e-155 AT4G31350 423 / 4e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10005504 [exp] 222 / 1e-68 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 222 / 1e-68 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 221 / 1e-68 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 222 / 2e-68 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 221 / 3e-68 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 220 / 3e-68 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076600 [exp] 585 / 0 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 573 / 0 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 239 / 2e-75 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 224 / 6e-70 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 222 / 7e-69 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 221 / 3e-68 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 219 / 1e-67 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 218 / 2e-67 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 218 / 3e-67 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 215 / 3e-66 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10006952 pacid=23165426 polypeptide=Lus10006952 locus=Lus10006952.g ID=Lus10006952.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGAGCTAATAAAGGGTGGCGTATAGGAATGGGTGATGTACAGATCTTTCATGGTCAACGCCACCGAGCTCCACTGAAGAGGCCAATATGGA TCATTGTGTTGGTCTCTATGGTCAGCTTGTTCTTGGTTTGTGCCTACATTTATCCACCGAGAAGTGGTTCAGCTTGTTACATCTTTTCATCGGGAGGGTG CAAGGCTATTGATGGTTGGCTTCCTCCTGCTCCAGAAAGGGAACTCACCGATAGCGAGATAGCTTCCCGTGTTTTCATTCGTGATATCTTGAATACTCCT CTTGTTCTACCGAAAACTCCGAAGATTGCTTTCATGTTCTTGACTCCTGGCCAGCTGCCTTTTGAGAAGCTCTGGGAGAAGTTCTTCACTGGTCACGAGG ATAAATTCTCCATCTATGTGCATGCTTCTAACAACAAACCGGTCCATGTGAGCCGTTACTTTGTCAATCGTGACATACGCAGCGAACAGGTGATATGGGG GAAAATATCTATGATTGATGCTGAGAGACGCCTATTAGCCAATGCTCTTCAAGATCCTGATAACCAGCACTTTGTTCTACTTTCTGATAGCTGCATACCA TTGCACAAGTTTGAATACGTGTACAACTATTTGATGTATACAAATGTCAGCTTCCTTGACTGTTTTTATGATCCTGGTCCGCATGGCAATGGCAGATATT CAGAACACATGTTGCCTGAAGTTGAATTGAAAGATTTCAGAAAAGGTGCACAGTGGTTCTCGATGAAGCGGCAGCATGCTCTGATAGTTATTGCTGACAG TCTCTACTACTCGAAATTCCGTGACTACTGCAAGCATGGCATGGATGGAGGGAAGAACTGCATAGCTGATGAGCACTATTTGCCGACATTTTTCCATATG ATTGACCCCCAGGGAATTGCAAACTGGTCAGTAACACACGTTGATTGGTCGGAGAGAAAATGGCATCCGAAATCATACAAGGCTCAAGATATTACTCGAG ATCTTTTAAACAATCTTACGGAAAACAGAGTTATTGGGATAGTTCTAACCTTGCGTAACGGTGTGAGTGCAGATGTTGGATGTGGACGAGCAGCCGTGCA TATGGAACGGGATCCAGAGGCCATGCTACTTATTCGCTCGGAAGTTTCGACCGGAAACGCAAGATAA
AA sequence Show only first row Show all	>Lus10006952 pacid=23165426 polypeptide=Lus10006952 locus=Lus10006952.g ID=Lus10006952.BGIv1.0 annot-version=v1.0 MKGGANKGWRIGMGDVQIFHGQRHRAPLKRPIWIIVLVSMVSLFLVCAYIYPPRSGSACYIFSSGGCKAIDGWLPPAPERELTDSEIASRVFIRDILNTP LVLPKTPKIAFMFLTPGQLPFEKLWEKFFTGHEDKFSIYVHASNNKPVHVSRYFVNRDIRSEQVIWGKISMIDAERRLLANALQDPDNQHFVLLSDSCIP LHKFEYVYNYLMYTNVSFLDCFYDPGPHGNGRYSEHMLPEVELKDFRKGAQWFSMKRQHALIVIADSLYYSKFRDYCKHGMDGGKNCIADEHYLPTFFHM IDPQGIANWSVTHVDWSERKWHPKSYKAQDITRDLLNNLTENRVIGIVLTLRNGVSADVGCGRAAVHMERDPEAMLLIRSEVSTGNAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	0	1
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	1.0	0.8851
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	3.7	0.7477
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	4.2	0.8019
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	4.2	0.7990
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	9.5	0.7433
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	10.2	0.7540
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	10.7	0.7520
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	12.0	0.7122
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	13.6	0.7464
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	14.1	0.7888

Compare expression of checked genes

Lus10006952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.