Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18850 548 / 0 SET domain-containing protein (.1.2) AT3G07670 88 / 3e-18 Rubisco methyltransferase family protein (.1) AT1G14030 81 / 4e-16 Rubisco methyltransferase family protein (.1) AT3G55080 42 / 0.001 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025463 [exp] 976 / 0 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10012309 [exp] 83 / 1e-16 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 67 / 2e-11 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10034599 [exp] 49 / 9e-06 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1) Lus10019677 [exp] 46 / 5e-05 AT1G01920 262 / 5e-84 SET domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G168900 [exp] 647 / 0 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2) Potri.014G169300 [exp] 90 / 8e-19 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 83 / 1e-16 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G077700 [exp] 50 / 4e-06 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.008G134200 [exp] 47 / 2e-05 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006953 pacid=23165436 polypeptide=Lus10006953 locus=Lus10006953.g ID=Lus10006953.BGIv1.0 annot-version=v1.0 ATGGAAGACAAGGGAAGCTGCAAAGTAGTTATTGAGCTTGCCGAAACGGAGCCATTTTTCGAGAGAAAGGAGCGTATTTTGCAGGATAGAGGTTTAAGGA CTAGAGTGGAGCTGGAGCTGGATTGTTCATGTCGTACTGATTCGGTTGCTGCTGAGCTGGAGCAGTTGCTTCAAGTAGAAAGGATCATACATTTAGATGA GATCGAACTGTACTTCAATGATTTCGAAGGAAGCGAACCGGTGGGATTCTGCAGTGCTAGGAACGAGGTGGAGGCTTTGAGATCAATCCTTTCCCTAATA AATCACAAGTTTCCTCAACAAACATCTACCAAAGGTCAAGCCTTTAGGGCTGCAATCAAGGATAGGATCTTAAAACACTGCATGGGAGGAAATGGCATGG TTAAGGGTAGCAGAATTAGTAGTAACGAATGTCGTAATGAAAAGAAGCTGATAGAATGGGGTGTTAGCAATGGTGTCAAGACAAGTTTGGAGATAGCGTT GGTTGAAGGAGCTGGGAGAGGAGCAGTAGCAGCAAAAGATCTAAATTTGGGGGACATTGCCTTGGAGATCCCCGAGTTTCTGATCATCTCTGAAGAACAT GCTCGCCATTCTGATGTGTTTAAAGTATTGAAGAAGATTGGAGGGATTTCTTTAGATACCATGATGTTGTTATGGAGCATGAAAGAACGGCATGACACTA AATCACAATTCAAGATTTACTTTGATACTTTACCAAAAGAGTTCAACACAGGACTGAGTTTTGGAGTCGATGCACTTATGGCTTTGGATGGAACCACACT GTTGGAGGAGATCATGCAGGCAAAAGAGCACTTGCGTGTTCAATACGAGGAGTTGGTTCCTAACTTGTGCGAAAACTACCCCGATACATTTCCTTCCGAG CTCTACACGTGGGAGAATTACGTATGGGCTTGTGAACTATGGTACTCCAACAGCATGAAGGTCTTACCTTCCGAGGGTGGGTCGTTGACCACTTGTTTGA TCCCAATCGTTGGCTTCCTCAATCACTCGCTCTATCCACACATAACCAACTTTGGTACAGTCGATCGTGCAACCGGCACGCTGAAATTCCTTCTGTCGAG GCCTTGTTCCGCTGGACAGCAATGCTGCCTTGGCTACGGGAACCTGTCGAGCTCACATCTGATTACATTCTACGGCTTCTTGCCACAAGGAGACAACCCA TACGATGTAATTCCGTTAGATATCGATGCGAGTGAAGAAGCTGATCGTTCTCACTTGGTACGAGGTACTTGGTTCTCAAACAACCATGGCATGTTCCATT ATGGGTTGCCAACTCCATTGCTGGATCTCTTGCGCAAGGCTCGCAATCATACACCTAATACCGCAACAATCACGAAGCAGGACATGGAAATGGAGATTGA GGTTCTGGAAGACTTGATCTCCACGTTCAACAGCATGATGGAGAATCTTGGTGACACAGAGGAAGAGGAGGATGATCATAGGTGGGATGTGAAGTTAGCT TTGCAGTTTAAAAACCGGCAAAGAAGGATCGTATCGTCAATTCTGTCTTCATGTGATGTTGGCATCAATCTGCTGCAAACCCATTTGGGCAAATGTACAA ATTAA
AA sequence Show only first row Show all	>Lus10006953 pacid=23165436 polypeptide=Lus10006953 locus=Lus10006953.g ID=Lus10006953.BGIv1.0 annot-version=v1.0 MEDKGSCKVVIELAETEPFFERKERILQDRGLRTRVELELDCSCRTDSVAAELEQLLQVERIIHLDEIELYFNDFEGSEPVGFCSARNEVEALRSILSLI NHKFPQQTSTKGQAFRAAIKDRILKHCMGGNGMVKGSRISSNECRNEKKLIEWGVSNGVKTSLEIALVEGAGRGAVAAKDLNLGDIALEIPEFLIISEEH ARHSDVFKVLKKIGGISLDTMMLLWSMKERHDTKSQFKIYFDTLPKEFNTGLSFGVDALMALDGTTLLEEIMQAKEHLRVQYEELVPNLCENYPDTFPSE LYTWENYVWACELWYSNSMKVLPSEGGSLTTCLIPIVGFLNHSLYPHITNFGTVDRATGTLKFLLSRPCSAGQQCCLGYGNLSSSHLITFYGFLPQGDNP YDVIPLDIDASEEADRSHLVRGTWFSNNHGMFHYGLPTPLLDLLRKARNHTPNTATITKQDMEMEIEVLEDLISTFNSMMENLGDTEEEEDDHRWDVKLA LQFKNRQRRIVSSILSSCDVGINLLQTHLGKCTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18850			SET domain-containing protein ...		Lus10006953 [exp]	0	1
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	1.7	0.9338
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Lus10038461 [exp]	3.0	0.9146
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10013308 [exp]	6.2	0.8925
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	6.5	0.9169
AT1G67420			Zn-dependent exopeptidases sup...		Lus10037015 [exp]	7.7	0.8834
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	8.0	0.9270
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	9.2	0.9314
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	9.3	0.9309
AT1G33110			MATE efflux family protein (.1...		Lus10013626 [exp]	9.5	0.9120
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10033470 [exp]	12.2	0.8793

Compare expression of checked genes

Lus10006953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.