Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57440 386 / 4e-137 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 376 / 3e-132 GPP1 glycerol-3-phosphatase 1 (.1) AT4G21470 137 / 9e-38 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT1G56500 57 / 5e-09 haloacid dehalogenase-like hydrolase family protein (.1) AT2G38740 54 / 2e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 42 / 0.0002 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025466 [exp] 434 / 3e-156 AT5G57440 357 / 1e-126 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028605 [exp] 151 / 5e-43 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 150 / 1e-42 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 141 / 2e-39 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10040116 [exp] 59 / 3e-10 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10000633 [exp] 59 / 7e-10 AT4G39970 427 / 1e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10003018 [exp] 59 / 8e-10 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10023149 [exp] 59 / 9e-10 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029840 [exp] 58 / 4e-09 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092500 [exp] 402 / 2e-143 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G077200 [exp] 145 / 6e-41 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 137 / 9e-38 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.014G043500 [exp] 56 / 5e-09 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147300 [exp] 52 / 1e-07 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 51 / 2e-07 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 50 / 3e-07 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 49 / 2e-06 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10006954 pacid=23165414 polypeptide=Lus10006954 locus=Lus10006954.g ID=Lus10006954.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCTTCCTCTGCTTTACACTGCAGCAGAAGTTTATTCTTTCCCGGTCACCGCCGCGTCAATCGCAATCTCCGCTTCCGCCCTCCGGCAAGCT CGCTCAACTTCCGCCGAGCAATGGCGAATCCCTCCGACACGACGACGGCCGCCGCCAAACTCCCCATCACTCACGTCATCTTCGACATGGACGGCCTTTT GCTCGATACGGAGAAGTTCTACACGGAAGTTCAGGAGATCATACTGGCTCGTTACAACAAAACTTTCGATTGGGAGCTGAAGGCCAAGATGATGGGGAAG AAGGCCATAGAGGCTGCTCGTGTGTTCGTTGAGGAAACTGGGATCAGTGATTCTCTTTCAGCTGAGGAGTTTCTTGTTGAAAGAGAGGCAATGCTGCGTG GCATGTTCCCCACTAGTGAGCTTATGCCAGGAGCTAGTCGTTTGGTGAAGCATCTCCACGCAAAAGGAATACCCATTTGTGTTGCAACTGGGTCTCAGAA GAGCCATTATGAACTGAAAACACAAAGACACGGTAAACTCTTCTCCTTGATGCATCATATTGTTCGGGGAGATGATCCAGAAGTTCAACAAGGAAAGCCT TCGCCGGATATTTTCCTTGCAGCTTCGAGGAGATTCGAGGGCGGAGATACTGACCGGCAGAATATTCTTGTGTTTGAAGATGCTCCTTCTGGGGTTCTTG CGGCTAAGAATGCTGGAATGTCTGCTGTAATGGTTCCTGATCCAAGACTGGATGCCTCTCATCATGCTGCTGCAGACGAAGTTATAAGCTCTTTGTTGGA CTTCAACCCACAGCCTTGGGGCCTACCTGCTTTTGAAAATGGAGAGTGA
AA sequence Show only first row Show all	>Lus10006954 pacid=23165414 polypeptide=Lus10006954 locus=Lus10006954.g ID=Lus10006954.BGIv1.0 annot-version=v1.0 MVVASSALHCSRSLFFPGHRRVNRNLRFRPPASSLNFRRAMANPSDTTTAAAKLPITHVIFDMDGLLLDTEKFYTEVQEIILARYNKTFDWELKAKMMGK KAIEAARVFVEETGISDSLSAEEFLVEREAMLRGMFPTSELMPGASRLVKHLHAKGIPICVATGSQKSHYELKTQRHGKLFSLMHHIVRGDDPEVQQGKP SPDIFLAASRRFEGGDTDRQNILVFEDAPSGVLAAKNAGMSAVMVPDPRLDASHHAAADEVISSLLDFNPQPWGLPAFENGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	0	1
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10025466 [exp]	1.0	0.8824
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10040803 [exp]	4.5	0.8332
					Lus10036954 [exp]	9.8	0.8206
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10039080 [exp]	10.7	0.8241
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	10.8	0.8546
AT3G15351			unknown protein		Lus10015973 [exp]	12.4	0.8041
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	13.0	0.8080
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	13.1	0.8430
AT2G42310			unknown protein		Lus10042351 [exp]	16.2	0.8110
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	19.8	0.7720

Compare expression of checked genes

Lus10006954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.