Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30110 1013 / 0 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 980 / 0 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 697 / 0 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT5G44790 271 / 1e-76 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 268 / 1e-75 HMA5 heavy metal atpase 5 (.1) AT4G33520 242 / 7e-67 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 233 / 8e-64 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G37270 182 / 4e-47 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT1G17260 89 / 1e-17 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT3G63380 84 / 5e-16 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025467 [exp] 1683 / 0 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006956 [exp] 372 / 3e-122 AT2G19110 303 / 9e-97 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038364 [exp] 260 / 9e-73 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031273 [exp] 258 / 6e-72 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 250 / 2e-69 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10008309 [exp] 244 / 4e-67 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10023777 [exp] 236 / 2e-64 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10019313 [exp] 193 / 1e-50 AT4G37270 1101 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10011510 [exp] 186 / 2e-49 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076900 [exp] 1070 / 0 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Potri.001G158900 [exp] 271 / 2e-76 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G075700 [exp] 269 / 1e-75 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G125600 [exp] 266 / 1e-74 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 261 / 3e-73 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 259 / 2e-72 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 248 / 1e-68 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.003G024000 [exp] 236 / 1e-64 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 233 / 8e-64 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 229 / 3e-62 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10006955 pacid=23165404 polypeptide=Lus10006955 locus=Lus10006955.g ID=Lus10006955.BGIv1.0 annot-version=v1.0 ATGGCAGAAGACGACAAGAAGACGAAGCTGCAGAAGAGTTACTTCGACGTTTTGGGGCTCTGCTGCGCGTCGGAGGTCCCTCTGGTGGAGAACATCCTGA AGTTGTTGGACGGCGTCAAGGACTTCTCAGTTGTCGTTCCGACGAAGACCGTGATCGTCGTCCACGACTCCCTCCTCATTTCCCAGCTCCAAATCGTCAA AGCTTTGAACCAGGCAAGGTTGGAAGCGAACGTGAGACTTGTTGGAGGCAGTGGCGGAGCGAATTATCGGAAGAGATGGCCGAGTCCGTACGCAATTGGG AGTGGTATTCTTCTGTTGATTTCATTCCTCAAGTACGTGTACCCTCCCATGAAATGGGTAGCAATCGGAGCCGTGGTTGTCGGAGTTCCTCCCATCCTCC TCAAAGCCATCGCATCCGTCCGAAACTCGAGGCTCGATGTCACCATCCTTGTCCTCATCGCCGTGATATCAACTGTGGCAATGAAAGACTACACTGAAGC AGCCACTGTTGTGTTCCTCTTCACCATAGCTGATTGGTTGGAGTCTAGAGCAAGCAACAAAGCAAGTGCAGTGATGACTTCGTTGATGAACATTGCTCCG CAGAAAGCCACGATAGCCGAGAGTGGGGAAGAGGTGGACGTCGATGAAGTGAAGTTGAACACAGTCGTGGCTGTCAAGGCTGGTGAGGCCATCCCCATCG ATGGGATTGTAGTGGACGGACAGTGTGATGTCGACGAGAAATCACTCACTGGGGAGTCGTTTCCGGTGTCTAAGCAGAAGGATTCTACAGTCTGGGCTGG AACAATTAACTTAAACGGCTACATAAGTGTCAGAACTACGGCTCTAGCTGAGGATTGCGTCGTAGCTAAAATGGCTACACTAGTAGAAGAAGCTCAGAAC AGCAAGTCCAGGACTCAGAGGTTCATCGACAAGTGCGCTCAGTACTATACCCCAGCGATTATACTGATATCGGCGAGCTTTGCGGTGATTCCACTGGCTT TAAGGGTTCACAACAGGAACCATTGGTTTCATCTGGCTCTGGTAGTGCTAGTAAGTGCTTGCCCGTGTGCTCTGGTGCTTTCCACACCAGTTGCAACATT CTGTGCACTAACAAAGGCTGCGACTGCCGGCCTTCTCATCAAAGGAGGTGATTACCTTGAGACGTTAGCAAAGATTAAGGTTGTTGCATTCGACAAGACC GGCACCATCACGAGGGGAGACTTTGTTGTTTCAGATTTCAAATCGGTGGGTGATGAGTTCAGCTCGGAGACGTTGGTTTACTGGGTGTCGAGCATCGAGA GCAAGTCTAGTCATCCGATGGCGGCTGCACTTGTTGACTATGGGAGGTCGCTTTCGATTGAGCCGAGGCCTGAAAATGTGGAGGAGTATGAGACCATTCC TGGTGAAGGCATTCATGGAAAAATTGATGGAAGAGACATCTACATTGGAAACAAGAAGATTGCTGTCAGAGCTGGATCAGGAGCTGTAGTGCCAATGGCC GAAGGTGGTAGAGATGGAGGAATGACCATTGGATATGTGTACTATGGAGGAACCCTTGCTGGCGTATTCAGTCTCTCCGATAGCTGTAGGACTGGCGTGA AAGAGGCGATTCACGAGCTTAAATCGATGGGGATCAGAACTGCAATGCTTACTGGAGATAGTCAAGCTGCAGCTATGCATGCTCAAACACAGCTAGAGAA TGCACTTGAGGAAGTTCATGCAGAGCTCTTACCGGAGGACAAGGCGAGGATTGTTGGAGAGTTCAAGAGGCAAGCAGGGCGAACGGCAATGGTAGGAGAC GGCATAAACGACGCCCCTGCATTAGCCACTGCTGATATCGGCATCTCGATGGGAATTTCAGGTTCAGCGCTTGCTACGGAAACCGGGCATGTGATTCTTA TGTCCAACGACATCAGGAAAGTACCCCAAGCTATCAAGCTGGCTAGGAGAGCTCATAGGAAAGTGATCGAGAATGTCGTCTTTTCGATCTGTACAAAGGG TTCCATCCTCGCGTTGGCCTTTGCGGGTCATCCGCTAATCTGGGCAGCTGTTCTTGCTGATGTTGGTACGTGCGTGCTTGTGATCCTCAACAGCATGCTG CTGCTACGTGGGACCCACCACAAAGAACACCACCATCGCGGCAAATCGTCAGCTGCAACTCATAACCACAAAGAGCACCATCAGCATCACGGCAAAGGAA ATTGTTGTTCTGAGCAGAAAGCTGAGAAGGTGGGCCACTCTGAAAAGACTAAATGCTGCACATCAGAACATGAACATCAGCCTAATCTTCATACTCAAAC TGCAAAGCCTTGTAAAGATTCCAAGTGCGGAAAATCAGCTGGCTGTGGAGCTAATAATGCAACAACTGAAGATTCTAAGCACTGTCATAAAGAACAGGTA AACAGTCTCCACAACCACGGGTGTTCAAAAACTCATAAGCCTAGCTTATGCACAGGGAAAGAGCATCATGAGACTGAAAGTTCAGAAGGAGTTCACCGTA GCTGTCAGAAAGACAAAACCTTTCTTGAGCAAGAACATGTGCACCACCACCACAAGGTCGATCATCATGGTAGCAATCTCAATGAAAGCATGGAAAACCA TGAGGATTGCCACTACGCCCATTGTGACCATCCCGATATTCACAGGAGCCTTGCTGAATCCACTTGTTGTAGCACTCTGCAGGAGAAACCAGGAAAGGAA CCTGCAAAGAAGTGCTGTGAAAGCAATGGCAATCCTTCTGGAAGAATCAGTTGCAAGCCAGTGAGTTCATGCCATGGTGGAAAGTCACACAGCCATCCTT GCAGCAGCGTGGGGAAAAGAAGCAGCGTGGAGAAAAGAGAGATTGGAGGCTGCTGCAAGAGCTACAGGAAAGAGTGTTGCAGGAGTAATGGGGGACTTCC ACCTGGCTTAGGTGGACGTTTGACTGAAATAGTCATAGAATAG
AA sequence Show only first row Show all	>Lus10006955 pacid=23165404 polypeptide=Lus10006955 locus=Lus10006955.g ID=Lus10006955.BGIv1.0 annot-version=v1.0 MAEDDKKTKLQKSYFDVLGLCCASEVPLVENILKLLDGVKDFSVVVPTKTVIVVHDSLLISQLQIVKALNQARLEANVRLVGGSGGANYRKRWPSPYAIG SGILLLISFLKYVYPPMKWVAIGAVVVGVPPILLKAIASVRNSRLDVTILVLIAVISTVAMKDYTEAATVVFLFTIADWLESRASNKASAVMTSLMNIAP QKATIAESGEEVDVDEVKLNTVVAVKAGEAIPIDGIVVDGQCDVDEKSLTGESFPVSKQKDSTVWAGTINLNGYISVRTTALAEDCVVAKMATLVEEAQN SKSRTQRFIDKCAQYYTPAIILISASFAVIPLALRVHNRNHWFHLALVVLVSACPCALVLSTPVATFCALTKAATAGLLIKGGDYLETLAKIKVVAFDKT GTITRGDFVVSDFKSVGDEFSSETLVYWVSSIESKSSHPMAAALVDYGRSLSIEPRPENVEEYETIPGEGIHGKIDGRDIYIGNKKIAVRAGSGAVVPMA EGGRDGGMTIGYVYYGGTLAGVFSLSDSCRTGVKEAIHELKSMGIRTAMLTGDSQAAAMHAQTQLENALEEVHAELLPEDKARIVGEFKRQAGRTAMVGD GINDAPALATADIGISMGISGSALATETGHVILMSNDIRKVPQAIKLARRAHRKVIENVVFSICTKGSILALAFAGHPLIWAAVLADVGTCVLVILNSML LLRGTHHKEHHHRGKSSAATHNHKEHHQHHGKGNCCSEQKAEKVGHSEKTKCCTSEHEHQPNLHTQTAKPCKDSKCGKSAGCGANNATTEDSKHCHKEQV NSLHNHGCSKTHKPSLCTGKEHHETESSEGVHRSCQKDKTFLEQEHVHHHHKVDHHGSNLNESMENHEDCHYAHCDHPDIHRSLAESTCCSTLQEKPGKE PAKKCCESNGNPSGRISCKPVSSCHGGKSHSHPCSSVGKRSSVEKREIGGCCKSYRKECCRSNGGLPPGLGGRLTEIVIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006955 [exp]	0	1
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	3.0	0.7340
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040286 [exp]	6.0	0.7533
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	6.3	0.7179
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10029101 [exp]	12.3	0.6297
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	16.3	0.7022
AT5G14940			Major facilitator superfamily ...		Lus10039465 [exp]	24.4	0.6665
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	26.2	0.7156
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10013641 [exp]	30.2	0.6858
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	30.4	0.7159
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	31.4	0.6837

Compare expression of checked genes

Lus10006955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.