Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30110 284 / 1e-89 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 283 / 4e-88 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 233 / 3e-73 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT1G63440 99 / 2e-23 HMA5 heavy metal atpase 5 (.1) AT5G44790 84 / 2e-18 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT5G21930 77 / 6e-16 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 74 / 6e-15 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025467 [exp] 341 / 5e-111 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10006955 [exp] 338 / 8e-110 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10038364 [exp] 99 / 3e-23 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 94 / 1e-21 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 91 / 9e-21 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031273 [exp] 91 / 1e-20 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10008309 [exp] 89 / 7e-20 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10023777 [exp] 81 / 3e-17 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10004086 [exp] 42 / 0.0003 AT3G63380 1039 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076900 [exp] 298 / 8e-94 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Potri.001G019100 [exp] 99 / 2e-23 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 99 / 3e-23 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 98 / 5e-23 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G105800 [exp] 96 / 3e-22 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 93 / 2e-21 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.003G075700 [exp] 91 / 1e-20 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.018G047800 [exp] 78 / 3e-16 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.001G205400 [exp] 76 / 2e-15 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 70 / 2e-13 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10006956 pacid=23165438 polypeptide=Lus10006956 locus=Lus10006956.g ID=Lus10006956.BGIv1.0 annot-version=v1.0 ATGTTGTTTTTCCTTGTCGCAACGATCATACTGATATCCTTGAGGTTCGCGGTGGTCGCACTGGCTTTAAGGGTTCACAACAGGAACCACTGGTTTCATC TGGCTCAGGTTGTGCTAGTAAGTGCATGTCCATGCGCACTGGTTCTGTCCACACCAGTTGCAACGTTCTGTGCACTCACAAAGGCTGCATCCGCCGGCCT ACTCATCAAAGGAGGCGATTACCTCGATATTTTAGCGAAGATTAGGGTCGGTGCGTTCAATAAGACCAGCACCATCACCAGCGGAGACTTTGTCTTTCGG ATTTCGAGTCGGTGTCAAACGATTTCTCCTCGGAGACGTTGGGTGTCGAGCATCGAGAGAAAGTCTAGTCATCCAATGGCGGCTGCACTTGTCGACTACG GGAGGTCGATTTTGATGAAGCCGAGGTCTGAGGATGTGGAGGAGTATGAGAACATTCCCTTTGAAGGCATTCGTGGCAAAATTGATGGAAGAGACATCTA CATTGGGAACAAGAGGATTGCTGTCAGAGCTGGATCAGGAACTGTTCCGATGGCCGAAGGTGTTGGAGATGGAGGAATGACAGTTGGATATGTGTACTAC GGAGGAACCCTTGCCGGTGTATTCAGTCTCTCCGATAGCTGTAGGACCGGTGTAAAAGAGGCGATCCGCGAGCTCAAATCGATAGGGATCCGAACTGCAA TGCTTACTGGAGATAGTCAAGCTGTGCAATGCAACTGA
AA sequence Show only first row Show all	>Lus10006956 pacid=23165438 polypeptide=Lus10006956 locus=Lus10006956.g ID=Lus10006956.BGIv1.0 annot-version=v1.0 MLFFLVATIILISLRFAVVALALRVHNRNHWFHLAQVVLVSACPCALVLSTPVATFCALTKAASAGLLIKGGDYLDILAKIRVGAFNKTSTITSGDFVFR ISSRCQTISPRRRWVSSIERKSSHPMAAALVDYGRSILMKPRSEDVEEYENIPFEGIRGKIDGRDIYIGNKRIAVRAGSGTVPMAEGVGDGGMTVGYVYY GGTLAGVFSLSDSCRTGVKEAIRELKSIGIRTAMLTGDSQAVQCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006956 [exp]	0	1
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	2.2	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	4.2	1.0000
					Lus10016867 [exp]	4.6	1.0000
					Lus10001326 [exp]	5.4	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	5.9	1.0000
					Lus10003843 [exp]	6.2	1.0000
					Lus10022996 [exp]	7.5	1.0000
					Lus10004351 [exp]	7.7	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	8.4	1.0000
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	9.0	1.0000

Compare expression of checked genes

Lus10006956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.