Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18890 460 / 7e-163 Protein kinase superfamily protein (.1.2) AT3G05140 356 / 8e-121 RBK2 ROP binding protein kinases 2 (.1) AT5G65530 348 / 7e-118 Protein kinase superfamily protein (.1) AT5G57670 344 / 1e-114 Protein kinase superfamily protein (.2) AT5G10520 331 / 4e-111 RBK1 ROP binding protein kinases 1 (.1) AT5G18910 331 / 2e-110 Protein kinase superfamily protein (.1) AT5G35960 309 / 7e-103 Protein kinase family protein (.1) AT1G21590 246 / 4e-75 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 235 / 5e-74 Protein kinase superfamily protein (.1.2.3) AT1G77280 242 / 2e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025468 [exp] 402 / 1e-141 AT2G18890 258 / 6e-86 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 377 / 1e-126 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10008192 [exp] 326 / 4e-109 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10018959 [exp] 327 / 6e-109 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10035949 [exp] 322 / 4e-107 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 318 / 6e-104 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 317 / 4e-103 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 307 / 6e-100 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10015516 [exp] 291 / 4e-94 AT5G57670 515 / 1e-177 Protein kinase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091200 [exp] 490 / 9e-175 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 479 / 1e-170 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 375 / 1e-126 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 375 / 2e-126 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.013G028100 [exp] 347 / 6e-117 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 326 / 1e-109 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 330 / 2e-109 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 322 / 1e-107 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.007G102400 [exp] 269 / 3e-84 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 268 / 8e-84 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006957 pacid=23165406 polypeptide=Lus10006957 locus=Lus10006957.g ID=Lus10006957.BGIv1.0 annot-version=v1.0 ATGAAGTACATCAGAACCAACAGCCTGAAACGCCTCTTCTCCTTAATCCGCCGCACTCTTGAAGAACACGACGACCACCATCTATCCATTGGACCGCCAA TCCTCACCACAAATCTCGACTCCCTACCAGCGAAACCCACCTGGAAATGCTTCTCCTACGACGAAATCTCCCTCGCGACCGACTCCTTCAACCCTCGCAA CATCGTCGGAAGAGGCGGGTACGCTGAAGTGTACCGGGGAATCCTCCCCGGGACAGGTGAACTGGTCGCCGTCAAAAGGCTGACGAAGTCGTGCACCGAT GAAAGGAAAGAGAAGGAGTTTCTGATGGAGATCGGCATCATCGGCCACGTTAACCATCCGAACGTTCTTCCGTTAGTAGGCTGCTGCATCGATAACGGAC TCTACCTCATTTTCCGTTACTCCTCCGTCGGCTCTCTCGCTTCCCTCCTCCATGGGGAGAATTGGAGAGTGTTAGATTGGGGGAGACGGTACAAAATTGC GATCGGTACGGCGAAAGGGATCAATTATTTGCATAAAGGATGCCAACGGAGGATCATCCATCGGGATATTAAGTCGTCGAATATTCTTCTGACCGAAGAC TATGAGCCTCTGATATCTGACTTTGGGCTAGCGAAATGGCTCCCGTCGCAGTGGTCGCACCATTCGATCGGGCCGATCGAGGGAACATTCGGACATTTGG CGCCGGAGTACTACTTGCACGGAATAGTGGACGAGAAGACGGACGTGTTTGCGTTTGGAGTGTTCCTACTCGAGCTGATCTCCGGCAAAAAACCGGTTGA CGGGTCTCACCGGAGCCTCCACAGCTGGGCGAAGCCAGTACTGAAGAGAGGGGAAGTGGAGGAAGTGGCAGATCCGAGGCTGGGAGGAGAATACGACGTT ACAGAGATGAGACAACTTGCATTTGCTGCTTCCCTATGCATCAGACCTTCTCCAGCCTGGCGCCCCACCATGAGCGAGGGATTGAAGGCGTTGTGCCATG TATCATCACCTGGACGACGGATCAACTAG
AA sequence Show only first row Show all	>Lus10006957 pacid=23165406 polypeptide=Lus10006957 locus=Lus10006957.g ID=Lus10006957.BGIv1.0 annot-version=v1.0 MKYIRTNSLKRLFSLIRRTLEEHDDHHLSIGPPILTTNLDSLPAKPTWKCFSYDEISLATDSFNPRNIVGRGGYAEVYRGILPGTGELVAVKRLTKSCTD ERKEKEFLMEIGIIGHVNHPNVLPLVGCCIDNGLYLIFRYSSVGSLASLLHGENWRVLDWGRRYKIAIGTAKGINYLHKGCQRRIIHRDIKSSNILLTED YEPLISDFGLAKWLPSQWSHHSIGPIEGTFGHLAPEYYLHGIVDEKTDVFAFGVFLLELISGKKPVDGSHRSLHSWAKPVLKRGEVEEVADPRLGGEYDV TEMRQLAFAASLCIRPSPAWRPTMSEGLKALCHVSSPGRRIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18890			Protein kinase superfamily pro...		Lus10006957 [exp]	0	1
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	9.5	0.8547
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	15.9	0.8269
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10029172 [exp]	23.4	0.8351
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	23.5	0.8288
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	29.6	0.8327
AT5G47390	MYB		myb-like transcription factor ...		Lus10004248 [exp]	32.6	0.8286
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	34.8	0.8203
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10016410 [exp]	39.8	0.7909
					Lus10033358 [exp]	45.4	0.8107
AT4G17620			glycine-rich protein (.1.2.3)		Lus10030023 [exp]	47.1	0.7888

Compare expression of checked genes

Lus10006957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.