Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57360 946 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 848 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G68050 738 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT1G51550 100 / 3e-22 Kelch repeat-containing F-box family protein (.1) AT5G58140 91 / 8e-19 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 83 / 3e-16 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT1G08420 81 / 2e-15 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT2G27210 81 / 2e-15 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT5G04420 77 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G18610 76 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025470 [exp] 1135 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10015531 [exp] 1013 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 727 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10019169 [exp] 722 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 701 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 691 / 0 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 688 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10034827 [exp] 97 / 3e-21 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 96 / 6e-21 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090800 [exp] 1009 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 977 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G105700 [exp] 760 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 751 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G252200 [exp] 118 / 4e-28 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 117 / 1e-27 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.004G209700 [exp] 94 / 1e-19 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 87 / 9e-18 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 85 / 7e-17 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G016900 [exp] 79 / 4e-15 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006959 pacid=23165440 polypeptide=Lus10006959 locus=Lus10006959.g ID=Lus10006959.BGIv1.0 annot-version=v1.0 ATGGAGTGGGACAGCAGCGATTCGGATCTGAGCAACGGCGACGATGAAGGGTACGGCAAGATCTTCGGCTTCGACGAAGACGACGCGGGTCCGATCCCTT TTCCTCTGCTGCAAGCAGAGCCGTGTGGGTTGGTTGTGACCGATGCTTTGGAGCCTGACCACCCAATCATCTACGTCAATACTGTGTTCGAGATGGTCAC TGGGTATCGCGCCGAAGAAGTCCTTGGCCGCAACTGCCGCTTCTTGCAATGTAGAGGACCATTTGCTAAAAGAAGGCATCCGTTGGTTGACTCCACAGTA ATCTCAGAAATAAGGCGGTGCCTTGAAGAAAACATGGAGTTCCAAGGTGAGTTATTGAATTTCAGAAAAGATGGATCCCCATTAATGAACCGGTTGCGCC TCACTCCCATATATGGCGAGGATGATATAATCACTCATGTTATTGGGATTCAGTTCTTCACCGAGGCAAATATCGATCTTGGCCCTGTACCAAACTTATC GGCCAGAGGATCACTAAAACTGATTGATCGCTTGGGTTCTACTCTTTCCACCTACCGCCCTACCCTGGCTAATGACCGGTCCGTTTCTCGTAGCGGGGTT TGTGGAATGCTGCAGTTGAGCGATGAGTTGATATCCGCGAAGATACTGTCACGTTTAACTCCACGAGATATTGCATCTGTTGGTTCGGTTTCTCGACGGT TTTACGAGCTTACGAAGGACGAGGACCTCTGGAGAATGGTCTCCGAGAATGCTTGGGGATGTGAAACAACTCGTGTTCTGGAAACCGTGCCGGGTGCCAA GAGACTAGGATGGGGCCGGCTCGCTCGGGAATTAACGACTCTCGAAGCAGCAGCGTGGAGAAAGCTTACTGTCTGTGGCACTGTTGAACCTTCTCGCTGC AATTTCAGTGCTTGCGCGGTAGGGAACCGGGTTGTCCTCTTCGGCGGGGAAGGTGTTAACATGCAACCGATGAATGACACCTTCGTATTAGATCTGAACT CAAACAATCCAGAGTGGGAGCATGTCCAAGTGAGCTCGCCTCCTCCGGGGAGATGGGGTCACACGATATCGTGTGTTAACGGCTCGAATTTGGTGGTTTT TGGAGGTTGTGGAAGGCAAGGGTTATTGAATGATGTTTTCTTGTTGGATTTGGATGCAAAGCCTCCGACTTGGCGCGAGATATCAGGATTGGCACCTCCG ATTCCTCGATCGTGGCATAGCTCGTGCACTCTCGACGGTAGCAAGTTGATCGTCTCCGGTGGGTGTGCTGATTCCGGAGTTCTTCTTAGCGATACCTTTC TGCTAGATCTTTCGATGGAGAAACCGGTGTGGAGAGAGATACCTGCTGCGTGGACCCCACCTTCTCGGCTAGGGCACACGCTCTCAGTTTACGGTGGCCG GAAGATACTGATGTTCGGTGGCCTGGCAAAGAGCGGTCCGCTAAGGTTTCGATCTAGCGATGTATACACAATGGATTTGAGCGAGGAAGAACCGTGTTGG AGATGTGTGACCGGAAGTGGAATGCCTGGGGCCGGGAATCCCGGGGGAGTGGCACCTCCTCCTAGGCTTGATCATGTAGCGGTGAGTCTTCCGGGCGGTC GGATCCTGATTTTCGGAGGTTCAGTTGCCGGTCTTCATTCCGCATCGCAGCTTTATCTGTTAGATCCAACGGAGGATAAACCCACGTGGAGGATTCTTAA CGTACCGGGAGGGCCTCCGAGATTTGCGTGGGGGCACAGTACTTGTGTGGTTGGAGGAACGAGGGCCATAGTTCTTGGCGGTCAAACTGGGGAGGAGTGG ATGCTTAGCGATCTTCACGAGCTCACCTTGGCAAGTTCAGCAATCTGA
AA sequence Show only first row Show all	>Lus10006959 pacid=23165440 polypeptide=Lus10006959 locus=Lus10006959.g ID=Lus10006959.BGIv1.0 annot-version=v1.0 MEWDSSDSDLSNGDDEGYGKIFGFDEDDAGPIPFPLLQAEPCGLVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTV ISEIRRCLEENMEFQGELLNFRKDGSPLMNRLRLTPIYGEDDIITHVIGIQFFTEANIDLGPVPNLSARGSLKLIDRLGSTLSTYRPTLANDRSVSRSGV CGMLQLSDELISAKILSRLTPRDIASVGSVSRRFYELTKDEDLWRMVSENAWGCETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVCGTVEPSRC NFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWEHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFLLDLDAKPPTWREISGLAPP IPRSWHSSCTLDGSKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVYTMDLSEEEPCW RCVTGSGMPGAGNPGGVAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYLLDPTEDKPTWRILNVPGGPPRFAWGHSTCVVGGTRAIVLGGQTGEEW MLSDLHELTLASSAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	0	1
AT5G24460			unknown protein		Lus10015572 [exp]	3.5	0.8899
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	4.2	0.8690
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	4.2	0.8797
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	4.7	0.8660
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10023383 [exp]	4.7	0.8845
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	5.5	0.8759
AT1G48040			Protein phosphatase 2C family ...		Lus10017106 [exp]	6.8	0.8464
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	6.9	0.8750
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	7.5	0.8486
AT3G22530			unknown protein		Lus10004901 [exp]	10.2	0.8704

Compare expression of checked genes

Lus10006959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.