Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18950 486 / 8e-172 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) AT3G11945 152 / 4e-42 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) AT3G51820 46 / 4e-05 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025472 [exp] 670 / 0 AT2G18950 504 / 7e-179 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Lus10016221 [exp] 145 / 3e-39 AT3G11945 538 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10029321 [exp] 120 / 5e-30 AT3G11945 399 / 5e-138 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Lus10002850 [exp] 52 / 4e-07 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10027815 [exp] 48 / 1e-05 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10003379 [exp] 48 / 1e-05 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090700 [exp] 530 / 0 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G166100 [exp] 374 / 4e-128 AT2G18950 379 / 2e-130 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.018G022000 [exp] 364 / 2e-123 AT2G18950 369 / 2e-125 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.006G197600 [exp] 152 / 6e-42 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.016G119400 [exp] 51 / 9e-07 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.006G102100 [exp] 47 / 1e-05 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10006961 pacid=23165405 polypeptide=Lus10006961 locus=Lus10006961.g ID=Lus10006961.BGIv1.0 annot-version=v1.0 ATGGAGTCTCTCCTCCTCCTCCCTTCTTCCCCTCAGCCACCATCGTTGCACTTGCTCCCCTCTGGTGGAAGGAGTTGGATGAACGTTGCTCTTAAGTCAG GCTTCCTCCCCAAGAGAATAGTTAAAGCTTCCACATCCACAACAGCAAATGCGAAACTAGAAGGATCATGTAGTTTATTAAGGCTGCAGAGAAATGGTGG CAAGCATCATCAAGTGAGAGCTATAAAGGAAGGATCTTTCAATCATCAACAGAGAAGTCGAACCAAGTTCATAGTCGATGCCACCTCCGGACAGCCACTC GAACCGGAGCCAGGAGGTTATGGTCCCAACTCCAAGAGTACTCTAGACTCGCTTAAGAAATCGTTGGATGCTTTCTACAGATTTTCTCGGCCTCACACTG TCATTGGGACGGCTTTGAGCATCATATCGGTTTCGTTACTCTCGGTTGAGAAGCTTGCTGACATTTCTCCACTCTTTTGCACCGGGCTGCTCGAGGCTGT GGCTGCTGCTCTTATGATGAACATTTACATCGTTGGCTTAAACCAGTTGACAGACATCGAGATAGACAAGGTTAACAAGCCATACCTTCCATTGGCATCC GGGGAGTATTCTGTGGGAACCGGTGTCTTCATTATTGCGACTTTCTCCATCATGAGTTTCTGGCTTGGATGGATTGTTAAATCATGGCCACTATTTTGGG CTCTCTTCATCAGTTTCGTCCTTGGCACTGCCTATTCAATCAATCTGCCACTATTGAGATGGAAGCGATTCGCTTTCGTAGCAGCATTGTGCATACTGGC AGTCCGGGCAGTGATTGTTCAAATCTGTTTCTATCTCCATATGCAGATGCATGTTTTTGGAAGAACCGCATCCTTTTCAAGGCCTCTGATTTTCGCAACT GCGTTCATGAGCTTCTTCTCCGTTGTTATAGCATTGTTCAAGGATATACCAGATATGGATGGTGATAAGATATTCGGCATCAAGTCTTTTACCGTACAAT TGGGACAAAAACCGGTATTCTGGACGTGCATTGCCTTGCTCGAAATTGCTTATGGCATCGCGATGTTCGTAGGGGCAGCATCACCCTTCGTCTGGAGCAA ATGCATCACGGTTGTTGGGCATACCATCTTGGCCTTCCTGCTGTGGAACCGCGCGAAATCAGTCGATCTGAGCAGCAAAGCCGCGATAACTTCTTGCTAC ATGTTCGTGTGGAAGCTGTTTTACGCTGAATATTTGCTCATACCGCTCGTGAGATAG
AA sequence Show only first row Show all	>Lus10006961 pacid=23165405 polypeptide=Lus10006961 locus=Lus10006961.g ID=Lus10006961.BGIv1.0 annot-version=v1.0 MESLLLLPSSPQPPSLHLLPSGGRSWMNVALKSGFLPKRIVKASTSTTANAKLEGSCSLLRLQRNGGKHHQVRAIKEGSFNHQQRSRTKFIVDATSGQPL EPEPGGYGPNSKSTLDSLKKSLDAFYRFSRPHTVIGTALSIISVSLLSVEKLADISPLFCTGLLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLAS GEYSVGTGVFIIATFSIMSFWLGWIVKSWPLFWALFISFVLGTAYSINLPLLRWKRFAFVAALCILAVRAVIVQICFYLHMQMHVFGRTASFSRPLIFAT AFMSFFSVVIALFKDIPDMDGDKIFGIKSFTVQLGQKPVFWTCIALLEIAYGIAMFVGAASPFVWSKCITVVGHTILAFLLWNRAKSVDLSSKAAITSCY MFVWKLFYAEYLLIPLVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	0	1
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	2.4	0.8662
AT4G35320			unknown protein		Lus10013844 [exp]	3.0	0.8472
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	3.9	0.8729
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10025823 [exp]	5.7	0.8295
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	6.3	0.8292
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	9.2	0.8110
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	9.5	0.8192
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	10.6	0.8259
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10035518 [exp]	11.5	0.7979
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	11.5	0.8276

Compare expression of checked genes

Lus10006961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.