Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18940 966 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 544 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 239 / 3e-67 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G06920 229 / 2e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 226 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 224 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 218 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 211 / 5e-59 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G14770 215 / 1e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 211 / 1e-58 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025473 [exp] 1522 / 0 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 1045 / 0 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 1036 / 0 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 514 / 4e-171 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 514 / 8e-170 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000036 [exp] 312 / 3e-101 AT2G18940 279 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000035 [exp] 312 / 4e-101 AT2G18940 281 / 6e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 233 / 8e-65 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10026206 [exp] 220 / 2e-59 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166200 [exp] 982 / 0 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 547 / 0 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 545 / 0 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 231 / 8e-65 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 229 / 1e-63 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 229 / 2e-63 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.005G046000 [exp] 223 / 2e-62 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 224 / 3e-61 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 215 / 4e-60 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G180000 [exp] 215 / 7e-60 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006962 pacid=23165424 polypeptide=Lus10006962 locus=Lus10006962.g ID=Lus10006962.BGIv1.0 annot-version=v1.0 ATGGAAGCCATCATATTACTCGACAAGCCAATCTACCCACCCATAATCAACCGCCATTCACCGCACCAGCAACCCAATCCATTCACCAAATTCACCTCCG CCATCCTTTCTCCTCCTCCGCCGCCGCCTCCTCCTCCCCGCTGCTCATTTCCTCAAACTCGACATTTCGAACCTATCCTCCACCAGCTCCTCCACCTCTC CCCCAATTCCAAACTCAACACCTCCCGCTTCACTCCACTTCGCGTGTCACCCAATGCCAACAGTTCGTCCGCCGTCGCCGTCGATCACTTGTCAAAAGAA GGTAAGCTCATGGTTGATTCCATCACCTCCCTCCCACTCCATCGCCTGCCTGATTTCTTCGATTCCCGCAAGTCAGAATTGGTTCGACTCGACTTGCATA GTTTACTTAAAGCGTTGGATCGTTATGGGAATTGGCAAAGAGCTCTACTTTTGTTTGAATGGGCGGTCTTAAGTGATAAGAAGATGGATAATCAGGTGGT TGAACTTATGGTGAGAATTCTGGGTAGAGAGTCGTGTTACACTATTGCATGCCAACTGTTCGATAAAATGCCTATGAGTGAATACGAACTCGATGTCAGG GCGTTGACCACCATTCTCCACGCGTATTCTCGCGCTGGAAAGTACGATAAAGCAATCAAATTGTTCCAAAGGATGAAAGATTCCGGATTGAAACCGAATC TGGTCGCTTACAATATAATGCTTGATGCTTACGGCAAGATGGGCGGTTCGTGGAGTCGAATTTTGAAACTCTTAGATGAGATTAGGTCAGTAGGGCTGGA ATTCGACGAGTTCACTTGCAGTACTGTGATATCAGCTTGTGGGAGAGAAGGATTGTTGGCTGAAGCTAGGGAGTTCTTCGCCGGACTCAAATCTTCGGGA TATGTTCCGGGGACGGTTACTTACAATGCATTGCTGCAGGTGTTTTCGAAATCCGGTCTTTACTTGGAAGCTTTAAGCACTCTTAACGAGATGGAGGAGA ACGAGTGTGTAACCGATTCCGTGACTTACAACGAAATCGTTTCTGCCTATGTCAGAGCAGGTTTCATCGAGGAAGGCGCCAATGTCATTGATACGATGAT CCTTAAAGGAGTGATGCCCGATGCTGTCACGTACACTACTGTGATCAATGCGTATGGTAAATCAGGAGAGATGGAGAAGGCGATCGGGTTATTCGAACAG ATGAAGAAGTGGGGCTGTGTCCCTGTTGCCTGTACTTACAATGCCATCCTTATGATGCTGGGAAACAAGTCAAAGTCGGAGGAGATGTTGATGTTACTCT CCGATATGAGGTCGAATCGATGTGCTCCTAACGATGTTACGTGGAACACGATGCTTTCCATGTGTGGTAAGGTGGGGATGCAGAGTTATGTCAGTCGTGT TTTTGAAGAGATGAAAGGTTCCGGTTTCGAGCCTGATAGGAATACTTTCAACAATTTGATCAGTGCCTATGGCAGGTGTGGATCAGACGCTACCGCGTCG GAGATGCATGAGAAAATGATCGAATCTGGTTTCACACCGAATGTTTCTACTTACAATGCGCTTTTGAATGCTCTGGCTTGTAAAGGGGACTGGAAAGGAG CAGAGTTACTGATTCAAGACATGAGAAACAAAGGTTTCAACCCGAGCGAAAGCTCTTACTCCATCATTCTGAATGCGTATGCGAAAGCGAAGAACATTGC AGGCATTGAGAGGATTGAGAATGACATCTATAAGGGCGATATCTTCCCCAGCCGGTTGCTTCTTAGAACACTTGCTCTTGCATTCCACAAATGCAGATGG CTAGTGGGGGCTGAAAGGGCGTTCGCTGCGTTTCAGAGACACGGTTACAAACCGGACCTAATTCTGTTCAATTCGATGCTGGCCATGTTTGCGAAATGCA ACATGACTGACCGAGTTCATTCGACACTGAACAGCATTCTCGAGAACGGGTTACAACCGGATCTCGTAACGTATAACAGCTTGATGGACATGTATACTCG AGCAAAGGATTGCTGGAAAGCGGAAAAGATCCTCAAGAGTCTGCAGGATGATTCGGGTTCAAAATCAAAACCGGACCTTGTCTCGTACAACACTGTGATC AAAGGATTCTGCAGACAAGGGCTTATGCAGGAAGCAATGAGAGTGTTCTCTGAGATGAACTTACGAGGAATCCGGCCATGTGTAGTCACATATAACACGT TTGTTACCGGGTATGCAGGACGAGGGATGTTCGAGGAGATCAAAGATGTTGTGAGGTATATGATTGAGCATGATTGCAGACCGAACCAGCTGACGTACAA GATTGCAGTTACCGGGTATTGCAAGGCAAGGAAATACAACGAAGCTATAGAGTTCGTATCGCAGATTAAATACATAGACAATGCCTTCGACGACGAGTCT GAGCATAGACTTGCTGATTACGTTAGAGATATGGTCAAATCATGCTGA
AA sequence Show only first row Show all	>Lus10006962 pacid=23165424 polypeptide=Lus10006962 locus=Lus10006962.g ID=Lus10006962.BGIv1.0 annot-version=v1.0 MEAIILLDKPIYPPIINRHSPHQQPNPFTKFTSAILSPPPPPPPPPRCSFPQTRHFEPILHQLLHLSPNSKLNTSRFTPLRVSPNANSSSAVAVDHLSKE GKLMVDSITSLPLHRLPDFFDSRKSELVRLDLHSLLKALDRYGNWQRALLLFEWAVLSDKKMDNQVVELMVRILGRESCYTIACQLFDKMPMSEYELDVR ALTTILHAYSRAGKYDKAIKLFQRMKDSGLKPNLVAYNIMLDAYGKMGGSWSRILKLLDEIRSVGLEFDEFTCSTVISACGREGLLAEAREFFAGLKSSG YVPGTVTYNALLQVFSKSGLYLEALSTLNEMEENECVTDSVTYNEIVSAYVRAGFIEEGANVIDTMILKGVMPDAVTYTTVINAYGKSGEMEKAIGLFEQ MKKWGCVPVACTYNAILMMLGNKSKSEEMLMLLSDMRSNRCAPNDVTWNTMLSMCGKVGMQSYVSRVFEEMKGSGFEPDRNTFNNLISAYGRCGSDATAS EMHEKMIESGFTPNVSTYNALLNALACKGDWKGAELLIQDMRNKGFNPSESSYSIILNAYAKAKNIAGIERIENDIYKGDIFPSRLLLRTLALAFHKCRW LVGAERAFAAFQRHGYKPDLILFNSMLAMFAKCNMTDRVHSTLNSILENGLQPDLVTYNSLMDMYTRAKDCWKAEKILKSLQDDSGSKSKPDLVSYNTVI KGFCRQGLMQEAMRVFSEMNLRGIRPCVVTYNTFVTGYAGRGMFEEIKDVVRYMIEHDCRPNQLTYKIAVTGYCKARKYNEAIEFVSQIKYIDNAFDDES EHRLADYVRDMVKSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10006962 [exp]	0	1
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	6.9	0.9112
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	9.7	0.9038
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10017566 [exp]	13.2	0.8046
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	15.7	0.9036
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006175 [exp]	17.0	0.8523
AT1G24610			Rubisco methyltransferase fami...		Lus10034599 [exp]	17.0	0.8890
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	17.5	0.8989
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10025473 [exp]	18.7	0.8459
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	18.9	0.8997
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	20.8	0.8936

Compare expression of checked genes

Lus10006962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.