Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 458 / 2e-163 Galactosyltransferase family protein (.1) AT3G06440 56 / 2e-08 Galactosyltransferase family protein (.1.2) AT1G27120 47 / 9e-06 Galactosyltransferase family protein (.1) AT4G21060 44 / 9e-05 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019998 [exp] 446 / 3e-158 AT5G57500 475 / 3e-170 Galactosyltransferase family protein (.1) Lus10015527 [exp] 441 / 1e-156 AT5G57500 473 / 2e-169 Galactosyltransferase family protein (.1) Lus10000372 [exp] 303 / 2e-102 AT5G57500 300 / 2e-101 Galactosyltransferase family protein (.1) Lus10000407 [exp] 218 / 7e-71 AT5G57500 211 / 2e-68 Galactosyltransferase family protein (.1) Lus10025474 [exp] 217 / 9e-71 AT5G57500 199 / 4e-64 Galactosyltransferase family protein (.1) Lus10006531 [exp] 201 / 6e-64 AT5G57500 202 / 1e-64 Galactosyltransferase family protein (.1) Lus10032650 [exp] 46 / 3e-05 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 45 / 5e-05 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 44 / 0.0001 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094000 [exp] 446 / 9e-159 AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1) Potri.007G131000 [exp] 312 / 2e-105 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1) Potri.010G151600 [exp] 52 / 2e-07 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 42 / 0.0004 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.015G067600 [exp] 42 / 0.0005 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 41 / 0.001 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006963 pacid=23165407 polypeptide=Lus10006963 locus=Lus10006963.g ID=Lus10006963.BGIv1.0 annot-version=v1.0 ATGAAGAGCCATCCTTTCATCCTCACCTCACTAACCTTCATCCTCTTATTTTGCCTCATAGGCTTCATCAACCAACTCCGGTTCGACCGAATCCTCAATT TCGACCAATGTGCCTACTCCAACAAACTCAAACCCTCTACCATCACCACTACCACTAGACTAACCCCTTCTTCCTTGTCCCCGGACACAAGTTTCGAGGA CGAAATCCGCATTTTAATAGGTATCCTGACCCTGCCAGACCAGTACTCGAAGCGTCACTTCCTCCGCATGGTCTACGGGACCCAAAAGTCCCCACCAGGC ACGAAAATCGACGTCAAATTCATCTTTTGCAACCTCACAAAAGAAGACCAAAAAGTACTCGTAGCGCTCGAGATCATGCGGTACGACGACGTAATCATCC TCAATTGCAAGGAGAACATGAACAATGGGAAAACCTACACTTACTTCTCCAGCCTCCCCGACATCTTCTCTAACGAAAGCCAATCACCGCCTCCTTATCA CTATGTCATGAAAACAGACGACGACACGTACTTTCGCCTCGAAAGCCTCGTGTCGTCTCTGATACCGCTCCCTCGCCATGATCTCTACTACGGGTACGTG ATCCCTTGCTCGAGCATGGACCCGTTCGTGAACTACATGTCCGGGATGGGGTACATGGTGTCGTGGGACATAGTGGAGTGGATTAAGGAGTCGGAGATCC CGAGGAACCATCTCGACGGGCCCGAGGATAAAGTGTTCGGAGAGTGGATGAAGAAAGGCCGGCGAGGGAAGAATCGACACAATGCTAAGTGGGCGATGTA CAATTTTCCGGTCCCCGCCACCGGTTGTACCCATGAGCTCTGGCCCGGGACGGTTGCGGTTCATTTGTTGAAGAATCAGCAGAAGTGGGTTGAGACTTTG AGTTACTTCAACGTTACCAAAGGTCTTAAGCCTTCCAAGTTGTACCATATTCCTTGA
AA sequence Show only first row Show all	>Lus10006963 pacid=23165407 polypeptide=Lus10006963 locus=Lus10006963.g ID=Lus10006963.BGIv1.0 annot-version=v1.0 MKSHPFILTSLTFILLFCLIGFINQLRFDRILNFDQCAYSNKLKPSTITTTTRLTPSSLSPDTSFEDEIRILIGILTLPDQYSKRHFLRMVYGTQKSPPG TKIDVKFIFCNLTKEDQKVLVALEIMRYDDVIILNCKENMNNGKTYTYFSSLPDIFSNESQSPPPYHYVMKTDDDTYFRLESLVSSLIPLPRHDLYYGYV IPCSSMDPFVNYMSGMGYMVSWDIVEWIKESEIPRNHLDGPEDKVFGEWMKKGRRGKNRHNAKWAMYNFPVPATGCTHELWPGTVAVHLLKNQQKWVETL SYFNVTKGLKPSKLYHIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57500			Galactosyltransferase family p...		Lus10006963 [exp]	0	1
AT5G60520			Late embryogenesis abundant (L...		Lus10015149 [exp]	3.2	0.9580
AT5G60520			Late embryogenesis abundant (L...		Lus10015148 [exp]	7.2	0.9441
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	7.6	0.9474
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	10.8	0.9444
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	11.5	0.9389
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	12.8	0.9433
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	16.9	0.9366
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	19.0	0.9353
AT5G54370			Late embryogenesis abundant (L...		Lus10020169 [exp]	23.0	0.9320
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	23.7	0.9242

Compare expression of checked genes

Lus10006963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.