Gene [FLAX] | FIBexDB

Lus10006964 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10025475 [exp]	226 / 2e-73	ND	/
Lus10025477 [exp]	207 / 2e-65	ND	/
Lus10025476 [exp]	124 / 8e-34	AT2G31620	44 / 3e-05	Receptor-like protein kinase-related family protein (.1)
Lus10006965 [exp]	103 / 1e-27	ND	38 / 7e-04
Lus10001030 [exp]	67 / 3e-13	ND	/
Lus10009372 [exp]	61 / 4e-11	ND	/
Lus10010415 [exp]	59 / 2e-10	ND	/
Lus10009371 [exp]	54 / 4e-09	ND	/
Lus10001031 [exp]	54 / 6e-09	ND	38 / 8e-04

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.011G027900 [exp]	43 / 0.0002	AT4G23180	542 / 0.0	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Potri.011G028100 [exp]	43 / 0.0002	AT4G05200	519 / 8e-177	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Potri.004G024052 [exp]	42 / 0.0003	AT4G23180	545 / 0.0	cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Potri.007G120300 [exp]	40 / 0.0009	AT3G22060	194 / 1e-61	Receptor-like protein kinase-related family protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF01657 [flax] [poplar]	Stress-antifung	Salt stress response/antifungal
		PF07172 [flax] [poplar]	GRP	Glycine rich protein family

Representative CDS sequence

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>Lus10006964 pacid=23165431 polypeptide=Lus10006964 locus=Lus10006964.g ID=Lus10006964.BGIv1.0 annot-version=v1.0

ATGGCAGATTTTTTGCTGCTTCTAGTAGTAGTCTTGGTATCTGGCATTGTAATTTCCAATACCGCTACCGTCATGGCGCTCCCTGCGACTCGAATTTACG

CGACTTTAAGCAACAATACTGTTCAACCTCAACGAGGAAGTGGTGGGCACGGGCACAGCAGTGGGCACAGCAGCGGGCACAGTGGTGCGCATGGAGGCGG

TGGGGCCGGCCATTACAACCCCGGTGGTCGAGGTGGAGGTGGCAGTTCAGGTATAACTTGGCGGGGGAGGTGCAGCGACGAAAAATGTATGCTACCTAGG

GCCGATGCAGGAGACGCTCAACGTCGGATACTGAGAGGTATTGCCGTTGCTCGGTTTCTTACGGGCAAAATTACCGGATGTTACTCTCTGAATTTCATTC

TGGACGGCGGTACTGCACTGCTAGTGTACAGCACATTCTCGTGCACCTTGGAACCATCTTATCGGTGCTCCAAATGTTTCGACTACGCCGCCAAACAGAT

ACAAGATGGGTGTAACGGTAGAGCTGGTGCAATTTCCTCCGACAACGTCTGTTGTTTAAGATATGAACTTTACAATTTCTGTGGCAACAATTCAGACTGG

AGGGGGAGGTGCAGCACCGAAGATGAGTTGCTACCTGCGTCAGATGCAGAAGCGGCTCAACGTCAGATACTGAAAGGTCCTGGCGATGCTCGGTTTCTTT

CCAGCAGCATCGTGGGATGTTACTCTCAGGCTTTCACTCTCGATAACACAGATACTGCACTGATAGTGTACAGCACTTTCGGCTGCACCTTGCATCTAGT

TGCTGATTGCCATGCATGTTTCATCGACGCCATCGGACAAATACACAAGTGGTGCCCAGGTAGAGTTGGTGCAATTTTCGCCGACAACTATCGCTCGTGT

AGTTTACGATATGAAACTTACGACTTCTGTGGTACCGCCGATGAATGCAACCTTTGA

AA sequence

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>Lus10006964 pacid=23165431 polypeptide=Lus10006964 locus=Lus10006964.g ID=Lus10006964.BGIv1.0 annot-version=v1.0

MADFLLLLVVVLVSGIVISNTATVMALPATRIYATLSNNTVQPQRGSGGHGHSSGHSSGHSGAHGGGGAGHYNPGGRGGGGSSGITWRGRCSDEKCMLPR

ADAGDAQRRILRGIAVARFLTGKITGCYSLNFILDGGTALLVYSTFSCTLEPSYRCSKCFDYAAKQIQDGCNGRAGAISSDNVCCLRYELYNFCGNNSDW

RGRCSTEDELLPASDAEAAQRQILKGPGDARFLSSSIVGCYSQAFTLDNTDTALIVYSTFGCTLHLVADCHACFIDAIGQIHKWCPGRVGAIFADNYRSC

SLRYETYDFCGTADECNL

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48540			receptor-like protein kinase-r...		Lus10006964 [exp]	0	1

Lus10006964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.