Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18840 343 / 1e-118 Integral membrane Yip1 family protein (.1) AT4G30260 304 / 1e-103 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025478 [exp] 395 / 3e-139 AT2G18840 392 / 8e-139 Integral membrane Yip1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093800 [exp] 317 / 1e-108 AT2G18840 288 / 1e-97 Integral membrane Yip1 family protein (.1) Potri.006G169200 [exp] 315 / 6e-108 AT4G30260 353 / 2e-123 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10006966 pacid=23165415 polypeptide=Lus10006966 locus=Lus10006966.g ID=Lus10006966.BGIv1.0 annot-version=v1.0 ATGTCGCACGGCGACACCATCCCTCTCCACTCCTCCTCCCAGTCCGACATCGATGAGATCGAGAATCTAATCAACGCCAGCGTCCATTCTAGCTCAGCCA CTGTACAACCCGCCCGCCCCCCGAGTCCACCTCGGATCCCCGTCTCTTCCTCTCCGTTCATCCAGTCCCACCTCCCTCCGCCTTCCGTGACTAACAACGC TCAGAAGCTCCCTCCTCCTCTGCCGCCTGTCTCGTCGGTGGTGCCTTCAGTTCCTGCTCATCCTCCTCCGCCGCCTGCCTCCGGATCGGCCAATTCGGGA GCTGCGTCTGGATTCGGCCCGACTCCGAATACTCTGACGGAGCCTGTTTGGGACACGGTGAAGAGAGATCTGTCTAGGATCGTGAGTAACTTGAAGCTGG TGGTGTTTCCTAATCCATTTAGGGAGGATCCGGGTAAGGCGCTGCGGGATTGGGATCTGTGGGGTCCGTTCTTCTTCATCGTGTTCTTGGGGCTTGTTCT ATCCTGGTCTGCATCGGTTAAGAAGTCTGAAGTGTTTGCTGTTGCATTTGCCCTACTCGCTGCTGGAGCTGTCATTTTGACACTGAATGTTCTGCTACTA CGAATTCGGAATGATAGTGAATACTCAATGCCACATGCCACGGCTGAAAGGTCCCGAAATCTTCAATTGTTGCAGGGTGGACACATAATCTTCTTCCAGA GCCTTAGCCTTCTGGGCTACTGCCTCTTCCCTTTAGACGTGGGCGCCCTGATTTGCATGTTGAAGGACAACGTGATCCTGAAGATCGTCGTGGTTTGCGT CACATTAGCATGGAGTTCATGGGCTGCCTATCCTTTCATGAGCACTGCTGTGAACCCTAGAAGAAAAGCCCTCGCGCTTTACCCCGTCTTTCTCATGTAT GTATCCGTCGGTTTCCTCATCATTGCCATCGACTAA
AA sequence Show only first row Show all	>Lus10006966 pacid=23165415 polypeptide=Lus10006966 locus=Lus10006966.g ID=Lus10006966.BGIv1.0 annot-version=v1.0 MSHGDTIPLHSSSQSDIDEIENLINASVHSSSATVQPARPPSPPRIPVSSSPFIQSHLPPPSVTNNAQKLPPPLPPVSSVVPSVPAHPPPPPASGSANSG AASGFGPTPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLVLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLL RIRNDSEYSMPHATAERSRNLQLLQGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVILKIVVVCVTLAWSSWAAYPFMSTAVNPRRKALALYPVFLMY VSVGFLIIAID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	0	1
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	1.0	0.9749
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	2.4	0.9418
AT4G22580			Exostosin family protein (.1)		Lus10028924 [exp]	3.5	0.9332
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	4.2	0.9346
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	4.2	0.9232
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	5.5	0.9237
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	6.3	0.9191
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	6.5	0.9070
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	6.7	0.9047
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	7.9	0.9202

Compare expression of checked genes

Lus10006966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.