Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57480 202 / 4e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 199 / 7e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 178 / 7e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 52 / 5e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 44 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015354 [exp] 59 / 1e-10 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015802 [exp] 47 / 2e-06 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041918 [exp] 45 / 1e-05 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10015349 [exp] 42 / 0.0001 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10037004 [exp] 42 / 0.0002 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10030667 [exp] 40 / 0.0004 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G169000 [exp] 202 / 4e-63 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G093600 [exp] 198 / 1e-61 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 51 / 8e-08 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 50 / 1e-07 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G047900 [exp] 47 / 2e-06 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 46 / 4e-06 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.009G119132 [exp] 46 / 4e-06 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.004G091500 [exp] 46 / 4e-06 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 46 / 5e-06 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 45 / 7e-06 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006967 pacid=23165433 polypeptide=Lus10006967 locus=Lus10006967.g ID=Lus10006967.BGIv1.0 annot-version=v1.0 ATGAAGGAGTACTGGACCTCTCTGGCCTCCCTCCTCGGCGTCCTCGCCTTCTGCCAGAGCCTCCTCCTCTCCCTCTTCCCGCCGGAGCTCCGCTTCGCCT TCCTCAACCTCACCTCCCGCCTCTTCTCCACCCTCTTCTCCTCCTCCTACCTCTACTTCGACATCACCGAGATCGACGGCGTCAACACCAACGAGCTCTA CAACGCCGTCCAGCTTTACCTCACCTCCTCCGTCTCCTCCTCTCTCCCTTCCCGCCTCTCCCTCACCCGCTCGCCCAACTCCTCCGCCGTCACCTTCGGC CTCGCCAACAACGACTCCATCTCCGACTCCTTCAACGGCGTCCCCCTCCTCTGGGAGCACGTCGTCACCCAGCGCAACTCCCAGTCCTTCTCCTGGCGCC CCTTACCGGACGAAAAGCGAGGATTCACTCTTCGGATTCGAAAAAAAGATAAATCCTTAGTCCTCGATTCGTACATCGATTACATTATGGATCCCGCCCG NATGTGCGGGGCGCCTGAGATGTAA
AA sequence Show only first row Show all	>Lus10006967 pacid=23165433 polypeptide=Lus10006967 locus=Lus10006967.g ID=Lus10006967.BGIv1.0 annot-version=v1.0 MKEYWTSLASLLGVLAFCQSLLLSLFPPELRFAFLNLTSRLFSTLFSSSYLYFDITEIDGVNTNELYNAVQLYLTSSVSSSLPSRLSLTRSPNSSAVTFG LANNDSISDSFNGVPLLWEHVVTQRNSQSFSWRPLPDEKRGFTLRIRKKDKSLVLDSYIDYIMDPAXMCGAPEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57480			P-loop containing nucleoside t...		Lus10006967 [exp]	0	1
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	1.0	0.9505
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	1.4	0.8965
AT3G15630			unknown protein		Lus10017768 [exp]	6.0	0.7532
AT1G01730			unknown protein		Lus10030384 [exp]	17.1	0.7656
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	18.0	0.7471
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	20.6	0.7527
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	21.4	0.6956
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	21.6	0.7503
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	23.6	0.7273
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	26.3	0.6876

Compare expression of checked genes

Lus10006967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.