Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025480 [exp] 133 / 1e-36 ND / Lus10019869 [exp] 55 / 2e-08 AT4G25850 48 / 4e-07 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006969 pacid=23165428 polypeptide=Lus10006969 locus=Lus10006969.g ID=Lus10006969.BGIv1.0 annot-version=v1.0 ATGGAGATCAACGATCGTCGGGTGCCGGCCGAAACGACGTCGTCCTCTGTGCTCCAAGCAGACGAGAAATTCTACAATCGGGTAATCTCACGCGACTCCT CCGTCTCATCCTCCGTCTCCAGCCGTGTGTTTTACTCACGCGCCGCCGCTGAAGGTGGGGTTCCCTTTAATTGGGAAACCCAGCCGGGGACCCCAAAGAA CAATCCCGAAGAGGAAAGGATTCCCCCAATTGGGCTTCCTCCCGCCGCTCTCAGCCTTTCCCTTCCTAACCCACGTTCGGTTATTAGCGACGACCACAAA GGCGGCGGCGACGACGGTGGAGGCGGTGGATTTAACGTCAGGAAGTTTAAGTTGTTGTGGAAATTCTTCGTCGGGAAAGGAAGGAGTATGAAGAGACGCC GGCGGTGGGGGCTTCATCAGCCGCAGAGAATTCGATCACCATTGATCTTAACCAGAGAGGAATTTGAATTCAATTCAATCCAATTCAATGGCAGCAGCAG CAGCAATGGTGATGAACAAATCATCAAGAAGAAGAGCGGAGAAGAGAACCATCATCTCACTCTACCAGCTCGACCCATCCTTCTACAACAAAATCATTTC TTGAGAAGCCTCCGTCGGAAATTCCGATTCGCTCCAAATCCACCACCCCCCTGCCATTGCCAACGTCCCTTTCGTCTGGGAGCTTCCCCCGGGGACTCCG AAGCTGAAATCGGCATCGGCATTTTCGATGCCGATTTTGGTTACGAAGTCCCATCCGCCGTCGATTCGGATTCCGAAACTGACGAACCTGACCGGGTTCC ATTTCAAATTGCGGAAGCGGATTTATCTGCCGGGGAAGAAGATGGTAATGGTGGTTCTTCAGGGGGGCGATTTCGGGATTACTTCTCCAGGGATGTGAAA TCGTGGTCGAGTGAAGTGTCGTCGCCGATTATATCGGTTTTCCGGCATGGTTCGTCCGGGGTGGCTGTATCGCCGGCGATTGATGGGCCGACAGGGTTTG CTTGGCGATCGGTGTTGGGGAAAAAGTTGGTGGCGAAGTTGAAATTTGTGAAGGCTGGTAAGACGACGTCGTAG
AA sequence Show only first row Show all	>Lus10006969 pacid=23165428 polypeptide=Lus10006969 locus=Lus10006969.g ID=Lus10006969.BGIv1.0 annot-version=v1.0 MEINDRRVPAETTSSSVLQADEKFYNRVISRDSSVSSSVSSRVFYSRAAAEGGVPFNWETQPGTPKNNPEEERIPPIGLPPAALSLSLPNPRSVISDDHK GGGDDGGGGGFNVRKFKLLWKFFVGKGRSMKRRRRWGLHQPQRIRSPLILTREEFEFNSIQFNGSSSSNGDEQIIKKKSGEENHHLTLPARPILLQQNHF LRSLRRKFRFAPNPPPPCHCQRPFRLGASPGDSEAEIGIGIFDADFGYEVPSAVDSDSETDEPDRVPFQIAEADLSAGEEDGNGGSSGGRFRDYFSRDVK SWSSEVSSPIISVFRHGSSGVAVSPAIDGPTGFAWRSVLGKKLVAKLKFVKAGKTTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10006969 [exp]	0	1
AT1G10800			unknown protein		Lus10041270 [exp]	1.7	0.9879
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	2.8	0.9878
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	6.2	0.9829
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	7.2	0.9814
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	8.5	0.9690
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	9.5	0.9769
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	9.8	0.9766
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	11.2	0.9744
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	12.3	0.9740
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	14.4	0.9712

Compare expression of checked genes

Lus10006969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.