Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 62 / 3e-10 Protein with RNI-like/FBD-like domains (.1) AT1G66310 61 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02910 58 / 4e-09 F-box/RNI-like superfamily protein (.1.2) AT1G16930 57 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G60400 56 / 4e-08 F-box/RNI-like superfamily protein (.1) AT1G49610 55 / 4e-08 F-box family protein (.1) AT5G44980 54 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G26922 53 / 2e-07 F-box/RNI-like superfamily protein (.1) AT5G02920 52 / 2e-07 F-box/RNI-like superfamily protein (.1) AT2G39415 49 / 3e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032255 [exp] 171 / 3e-49 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 148 / 2e-40 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10042550 [exp] 145 / 1e-39 AT5G53840 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 143 / 1e-38 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006513 [exp] 142 / 1e-38 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 137 / 1e-35 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10038935 [exp] 127 / 5e-33 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10022007 [exp] 123 / 5e-32 AT2G14045 126 / 3e-36 unknown protein Lus10007058 [exp] 124 / 7e-32 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 99 / 7e-23 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 87 / 1e-18 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 71 / 5e-13 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 70 / 6e-13 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 64 / 7e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 56 / 2e-08 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 52 / 3e-07 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 50 / 2e-06 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.017G146300 [exp] 49 / 3e-06 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 49 / 4e-06 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006970 pacid=23165412 polypeptide=Lus10006970 locus=Lus10006970.g ID=Lus10006970.BGIv1.0 annot-version=v1.0 ATGTCGGGGAAGTCCAATCAGCTAGCGACACTTAACAGTTGTTGGAAGAGGAGGGAAAGGATGAGCCATGGCAAGAGAAAAAGAGGGGAAGGGGAAGAAG AAGATGTTCTTGTCGAAGAAGAAATCGACAGACTTAGCGATCTTCCGGACAGCATTCTGCATCACATTCTATCCTTGGTCGACACCAAATCCATAGCCCG AACCAGCTACCTGTCGAAAAGGTGGAGATCCTTGTGGAAAGACGTCCCCGCCATCAATTTCAAGAGAAGCTGCTTTGATTCGGATCTGGTTTTCATAGAA CACGTACTCCGGTTTATGTCCTTCCGATCCGGTTTTCGTGGATCTGTTGGGAGAGTTAACCTGGACTACAGCTTTCATAGATGGATCGAGCCACCGGAAA TTGAAGCATTTGATCGCATCATGAGAGTTGCTGCCTCTCATGGTGGTGGTCATCTCCAAAGTCTTTCACTAAGCATTATCCCTAATGACCCCTCCTCCTT CCGCCGATTTGCTGCTTCGATAATTGCTTACCGTCATCATGATTATCTCACGACTCTCGAGTTGAGTGAGTTACGTCTCACTGTCCCTCCGAGTGAGAGC TTCAACTTGCTTACGACTCTGCAGCTTTTCCGCTGCAATCTGCTCTACAAGGATCCTTTTGCCAATTTCCCGAGCTTGAAGTACTTGAAGCTAATCGGCT GCGCATCATCGGTGAACTTAGAAGTGCGGGGACTCAATCTGCTGGAGTTAGATATTCAATGGACGAACAATGTGCTCCCTAGGCCGATTGAAGTCTCTGC TCCCGAGTTGAAATCTTTCCGCTTTGTAGGTGAGGATGAAGGTTGGAAGGTGTTCCCGAAGTTGGATGTCCCCACCCTGAATCACGCAGACATCCGCCTT CGGTGGTGGAACAAGGTCGAATTCCTCCACGACGAGTTAATGGTCGAGGCTAATCGTGCGTGCGTAAGATTGCTACGTGGTTTGCATAACGTCAAATCTC TCGTCCTCTGCTTCGATAATTGCGTGGAATATGATGTGCAACACAACTCTCCTTTTGTGGGGATGAAGTCGTTAATGGAGGTTGAACCATCTCCCTTCAC TAGATTGGAGACTTTGAAGGTGCAGTATAAGAAAGGGCTAGTGAACATACCTTATGAAGTGATTCGTTACTTTTTCGAAGCGTCTCGTTCAAAGGATAAG TCCTTTGTGCTCGAGAAGATAGGATGA
AA sequence Show only first row Show all	>Lus10006970 pacid=23165412 polypeptide=Lus10006970 locus=Lus10006970.g ID=Lus10006970.BGIv1.0 annot-version=v1.0 MSGKSNQLATLNSCWKRRERMSHGKRKRGEGEEEDVLVEEEIDRLSDLPDSILHHILSLVDTKSIARTSYLSKRWRSLWKDVPAINFKRSCFDSDLVFIE HVLRFMSFRSGFRGSVGRVNLDYSFHRWIEPPEIEAFDRIMRVAASHGGGHLQSLSLSIIPNDPSSFRRFAASIIAYRHHDYLTTLELSELRLTVPPSES FNLLTTLQLFRCNLLYKDPFANFPSLKYLKLIGCASSVNLEVRGLNLLELDIQWTNNVLPRPIEVSAPELKSFRFVGEDEGWKVFPKLDVPTLNHADIRL RWWNKVEFLHDELMVEANRACVRLLRGLHNVKSLVLCFDNCVEYDVQHNSPFVGMKSLMEVEPSPFTRLETLKVQYKKGLVNIPYEVIRYFFEASRSKDK SFVLEKIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	0	1
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10021141 [exp]	1.4	0.8577
AT5G13100			unknown protein		Lus10015761 [exp]	8.1	0.8229
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	10.4	0.8716
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10008792 [exp]	11.0	0.8405
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	12.8	0.8570
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	14.7	0.8555
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	15.7	0.8482
AT1G32420			F-box and associated interacti...		Lus10018969 [exp]	15.7	0.8504
AT3G47850			unknown protein		Lus10004255 [exp]	16.0	0.8018
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	16.4	0.8475

Compare expression of checked genes

Lus10006970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.