Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 599 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 596 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 593 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 502 / 5e-175 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 487 / 5e-169 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 410 / 2e-138 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 201 / 3e-58 ATINT1 inositol transporter 1 (.1) AT5G16150 197 / 2e-56 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT5G17010 191 / 2e-54 Major facilitator superfamily protein (.1.2.3.4) AT5G26340 191 / 3e-54 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035255 [exp] 683 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 682 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 666 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 639 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 637 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 616 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 530 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 488 / 4e-169 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 490 / 3e-165 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152300 [exp] 650 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 643 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 636 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 494 / 8e-172 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 448 / 4e-154 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 433 / 1e-147 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 395 / 8e-133 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 207 / 1e-60 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 203 / 4e-59 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 197 / 5e-56 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10006971 pacid=23165430 polypeptide=Lus10006971 locus=Lus10006971.g ID=Lus10006971.BGIv1.0 annot-version=v1.0 ATGGAGGATGGATCAGTTACAGAGACGACACTGAAGAACAAGACTAATGGAGCCGTCGACGACGTTAAGAAATCTCCGACGAACAAGTTCGCTTTCATCT GCACAATCATGGCTTCCATGACCTCCGTCTTACTCGGCTATGACATGGGAGTGATGAGCGGCGCCGTCATCTTCATCAAGGAAGACATGAGAATCTCGGA CGTCCAGGTGGAGATTCTGGTGGGGACACTAAATTTGTACGCGCTGGTGGGTTCCGCCGTCGCGGGGAGGACGTCCGACTGGATCGGCCGCCGCTACACC ATCGTCATAGCCGCCGCCAACTTCTTCACCGGAGCTCTTCTGATGGGGTTCGCCACCAACTACGTGTTCCTCATGGTCGGCCGGTTCGTCGCCGGGATCG GCGTCGGGTACGCATGCATGATCGCTCCGGTGTACGCCACCGAGCTCTCGCCGACTCATTTCCGCGGATTTCTCGCTTCTTTTCCCGAGGTTTTCGTCAA CATAGGAGTCCTGCTAGGCTACATCTCCAACTACGGATTCTCAAAGCTCCCGCAGAATCTAGGATGGCGGCTCATGCTAGGAGTAGGCGCAATCCCGTCG GTCCTCCTCGCGGTCAACGCCTTGCTCATGCCGGAATCCCCTCGATGGCTAGTCATGGAAGGCCGGCTCGCGGACGCCAAGCGCGTGCTGCTCAAGATCT CCAATACCGCACAGGAGGCGCAGGAGAGGCTATACGACATCAAGGAAGCCGCCGGCATCCCACGAGAGGACCAAAACGACATTGTTCAGGTCCGGAAGCT TATGAAACGAGGAGGAGGAGGAGAAGGGGTGTGGAAAGACCTTTTGGTCCACCCCACACGTCCCGTGGCACACATTTTGTTGTGCGCGCTCGGGGTTCAC TTTTTCCAACAGGCTGTAGGGTTCGACACTGTGATTCTCTATAGTCCCAGGATCTTCGAGAAGGCCGGGATCACATCCACCCACAAGAAGCTCCTGGCCA CAATCGCCGTCGGGGTGATCAAGACTCTCTTCATTGTCGTGGCAATGTTCCTCCTCGACAGGATAGGACGACGACCGTTGCTTCTGACGAGCTACGCCGG GATGGTGGTCTCGTTATCGACGCTGGGCGGAACACTTCAAGTGATTAACCGGGACCCTACCCGGAATATCGGGTGGGCGGTTCGGTTGGCGATCTCGGCG GTGTTGTCGGCGGTCGCATTTTTCTCGATCGGGGCCGGGCCGATTGCCATGGTGTACAGTGCAGAGATTTTCCCGTTGAGGTTAAGGGCTCAGGGGATAA GTTTAGGGATGGCGGTGAATCGGGTGGTGAGCGGGGTCATCTCGATGTCGTTTTTGTCTCTGTACAAGGCGATCACGATCGGAGGGGCGTTTTTCATGTT TGCTGGGATCGCAGCCGTTGGATTTCTGTTCTTTTTCCTGTTTTACCCTGAGACCCAAGGGAAGACGCTCGAGGAGATGGAAGGGCTGTTTGGGAATTTT GTTCGTTGGAGATCTAGTCATGGAAATGGTGTACAGAAATGTGAAAGCTAG
AA sequence Show only first row Show all	>Lus10006971 pacid=23165430 polypeptide=Lus10006971 locus=Lus10006971.g ID=Lus10006971.BGIv1.0 annot-version=v1.0 MEDGSVTETTLKNKTNGAVDDVKKSPTNKFAFICTIMASMTSVLLGYDMGVMSGAVIFIKEDMRISDVQVEILVGTLNLYALVGSAVAGRTSDWIGRRYT IVIAAANFFTGALLMGFATNYVFLMVGRFVAGIGVGYACMIAPVYATELSPTHFRGFLASFPEVFVNIGVLLGYISNYGFSKLPQNLGWRLMLGVGAIPS VLLAVNALLMPESPRWLVMEGRLADAKRVLLKISNTAQEAQERLYDIKEAAGIPREDQNDIVQVRKLMKRGGGGEGVWKDLLVHPTRPVAHILLCALGVH FFQQAVGFDTVILYSPRIFEKAGITSTHKKLLATIAVGVIKTLFIVVAMFLLDRIGRRPLLLTSYAGMVVSLSTLGGTLQVINRDPTRNIGWAVRLAISA VLSAVAFFSIGAGPIAMVYSAEIFPLRLRAQGISLGMAVNRVVSGVISMSFLSLYKAITIGGAFFMFAGIAAVGFLFFFLFYPETQGKTLEEMEGLFGNF VRWRSSHGNGVQKCES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006971 [exp]	0	1
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	1.4	0.8743
					Lus10010245 [exp]	1.7	0.8336
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012001 [exp]	2.0	0.8570
AT3G05060			NOP56-like pre RNA processing ...		Lus10007265 [exp]	2.8	0.8218
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	10.6	0.6953
					Lus10013529 [exp]	16.4	0.6889
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	18.5	0.6696
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	21.0	0.6749
					Lus10022658 [exp]	21.9	0.6162
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	24.7	0.6491

Compare expression of checked genes

Lus10006971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.