Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30210 935 / 0 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 808 / 0 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 226 / 7e-65 Flavodoxin family protein (.1) AT4G05390 69 / 2e-12 ATRFNR1 root FNR 1 (.1.2) AT1G30510 65 / 5e-11 ATRFNR2 root FNR 2 (.1.2.3) AT5G66190 63 / 1e-10 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 62 / 5e-10 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015525 [exp] 1063 / 0 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 1060 / 0 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 821 / 0 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10032842 [exp] 696 / 0 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10002416 [exp] 395 / 8e-133 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025484 [exp] 326 / 7e-107 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2) Lus10017589 [exp] 190 / 8e-52 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10033550 [exp] 66 / 1e-12 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10038538 [exp] 68 / 1e-11 AT4G05390 624 / 0.0 root FNR 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092100 [exp] 978 / 0 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.006G167200 [exp] 964 / 0 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 800 / 0 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 423 / 2e-144 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106632 [exp] 220 / 2e-66 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 197 / 2e-54 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.005G112900 [exp] 61 / 9e-10 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 61 / 2e-09 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.007G057200 [exp] 59 / 4e-09 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.011G027100 [exp] 51 / 1e-07 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00667 [flax] [poplar] FAD_binding_1 FAD binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [flax] [poplar] Flavoprotein PF00258 [flax] [poplar] Flavodoxin_1 Flavodoxin
Representative CDS sequence Show only first row Show all	>Lus10006972 pacid=23165402 polypeptide=Lus10006972 locus=Lus10006972.g ID=Lus10006972.BGIv1.0 annot-version=v1.0 ATGGAATCATCCACGTCTGCGCCGTCGGGTTCCATGTCGCCGATCGAGATCATGTCGGCGATAATCAGGGGGCAGTTCACGTCGGCCGGCGTGGCGAACG GTTCTTCGACCGAGGCGGTGGCCTCGTTGATCCTGGATAACAGGGATTTCGTCATGATTTTGACGACTTCAATCGCTGTTCTGATCGGATGTGTGGTGGT GTTGGTGTGGAGGAGGTCCAGCGGACGGAAGGCTAAGAGTTGGGAGCCTCCGACGCCTCTGGTTGTTAAGAAGAAGGAAGAGGAGGTCGACGATGGGAAG ACGAAGGTCACGGTCTTCTTCGGTACTCAGACCGGTACTGCTGAAGGATTCGCCAAGGCTTTGGCTGAGGAAGGGAAAGCGCGGTATGAGAAAGCTGTGT TCAGAGTTGTTGATATGGAGGATTATGCTGGAGATGATGATGAATACGAGGAGAAATTCAAGAAAGAGTCTTTGGCTTTCTTCTTCCTCGCTACATATGG AGATGGTGAGCCGACTGATAATGCAGCAAGGTTCTACAAGTGGTTTACCGAGATTGGTAAGGAGATAGATGAGCTTCTGGCTGAGCAAGGTGCCCAACGT ATCGTTCCTGTGGGTCTTGGAGATGATGATCAATGCATGGAAGATGACTTTACTGCCTGGAAAGAGCAGGTGTGGCCCGAGCTTGATGGATTGCTCCGTG ATGAGGATGATCAAGCATCTGCTGCTACCCCTTATACTGCTGCCGTGTTGGAATACAGGGTTGTCTTTTATGACTCAACTGACGCACCCGCAGATGACAA GAGCTGGAGCAATGCCAATGGCCATACCGTTCATGATGCTCAACACCCATGCAGGGCTAATGTCGCTGTAAGGAAAGAGCTTCACACTCCAGTATCGGAC CGATCTTGCACCCATTTGGAATTCGACATTGCCGGCACTGGACTCTCATATGAAACTGGGGACCATGTTGGTGTGTACTGTGAGAATCTCGAGGAGACCG TAGAAGAGGCCCTGCAGTTATTAGGTTTATCACCTGACACTTACTTCTCTGTCCATGCTGATAAAGAGGATGGCACACCACTTAGTGGAAGCTCCTTACC AGCGGCATTCCCACCGTGCACGCTGAGAACAGCTCTGGCTCGATATGCCGATCTTTTGAATTCCCCCAAAAAGTCTGCTCTGCTTGCTTTGGCAGCGCAT GCTACTGATCCAACAGAAGCCGATCGATTGAGGCATCTAGCGTCTCCCGCTGGCAAGGATGAATATTCAAAATGGATAGTTGCAGAACATAGAAGTCTCC TTGAGGTCATGACTACGTTCCCCTCCGCTAAGCCCCCACTCGGTGTATTCTTTGCTGCAGTTGCTCCTCGCTTGCAGCCCAGATTCTATTCTATCTCTTC CTCTCCAAGGATGGCACCATCTCGGATTCACGTCACATGTGCTCTAGTGCTTGAGAAAACACCAGGAGGCCGAACTCACAAGGGGGTGTGCTCGACCTGG ATGAAGAATGCTGTTCCTATGGAGAAGAGCCAGGAGGACTGCAGCTGGGTGCCAATTTTCGTTCGGCAGTCGAATTTCAGGCTTCCCGTAGACACGAAAG TTCCCATCATAATGATCGGTCCCGGAACTGGCCTGGCTCCTTTCAGGGGCTTCCTTCAGGAAAGATTAGCTCTCAAAGAAGCTGGTTCAGAACTGGGGAC CTCCCTTTTCTTCTTCGGTTGCAGAAACCGTAGTACGGTGAGCAACCATGGATTCCGGTGCAAAATACTACTCATCCTATCTTATTCGCAATCCGAATCT CACATTTCTGAATTCTATGTGAAGGATTTCATCTACGAGGACGAGCTCAACAACTTTGTCGAAACTGGTGCGCTCTCTGAGCTGATTGTTGCCTTCTCAA GGGAAGGACCTACCAAAGAGTACGTCCAGCATAAAATGATGCAGAAGGCTTCGGAGATATGGAATTTGATTTCGGAGGGAGCGTACGTGTACGTATGTGG CGATGCTAAAGGCATGGCCAAAGACGTCCACCGGACCCTCCACACCATCGCCATCGAACAGGGCTCGCTCGAGACCTCCAAGGCGGAAGGCTTGGTAAAG AATCTGCAAACGAGTGGCCGGTATCTACGTGACGTCTGGTGA
AA sequence Show only first row Show all	>Lus10006972 pacid=23165402 polypeptide=Lus10006972 locus=Lus10006972.g ID=Lus10006972.BGIv1.0 annot-version=v1.0 MESSTSAPSGSMSPIEIMSAIIRGQFTSAGVANGSSTEAVASLILDNRDFVMILTTSIAVLIGCVVVLVWRRSSGRKAKSWEPPTPLVVKKKEEEVDDGK TKVTVFFGTQTGTAEGFAKALAEEGKARYEKAVFRVVDMEDYAGDDDEYEEKFKKESLAFFFLATYGDGEPTDNAARFYKWFTEIGKEIDELLAEQGAQR IVPVGLGDDDQCMEDDFTAWKEQVWPELDGLLRDEDDQASAATPYTAAVLEYRVVFYDSTDAPADDKSWSNANGHTVHDAQHPCRANVAVRKELHTPVSD RSCTHLEFDIAGTGLSYETGDHVGVYCENLEETVEEALQLLGLSPDTYFSVHADKEDGTPLSGSSLPAAFPPCTLRTALARYADLLNSPKKSALLALAAH ATDPTEADRLRHLASPAGKDEYSKWIVAEHRSLLEVMTTFPSAKPPLGVFFAAVAPRLQPRFYSISSSPRMAPSRIHVTCALVLEKTPGGRTHKGVCSTW MKNAVPMEKSQEDCSWVPIFVRQSNFRLPVDTKVPIIMIGPGTGLAPFRGFLQERLALKEAGSELGTSLFFFGCRNRSTVSNHGFRCKILLILSYSQSES HISEFYVKDFIYEDELNNFVETGALSELIVAFSREGPTKEYVQHKMMQKASEIWNLISEGAYVYVCGDAKGMAKDVHRTLHTIAIEQGSLETSKAEGLVK NLQTSGRYLRDVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10006972 [exp]	0	1
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025485 [exp]	3.3	0.8100
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10005819 [exp]	6.7	0.8354
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	17.1	0.8202
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011260 [exp]	24.9	0.7948
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	28.6	0.8341
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	34.3	0.8181
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	69.3	0.7921
AT1G51580			RNA-binding KH domain-containi...		Lus10034831 [exp]	70.0	0.7697
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Lus10017365 [exp]	74.2	0.7983
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	97.7	0.7737

Compare expression of checked genes

Lus10006972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.