Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30020 1203 / 0 PA-domain containing subtilase family protein (.1) AT2G19170 1197 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT5G44530 572 / 0 Subtilase family protein (.1) AT4G20430 566 / 0 Subtilase family protein (.1.2) AT1G30600 560 / 0 Subtilase family protein (.1) AT1G62340 515 / 6e-171 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G34980 299 / 1e-89 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 296 / 2e-88 ARA12 Subtilase family protein (.1) AT3G14240 285 / 5e-84 Subtilase family protein (.1) AT3G14067 280 / 3e-82 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001310 [exp] 1413 / 0 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 585 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 582 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10000960 [exp] 566 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 562 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001006 [exp] 553 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10008060 [exp] 538 / 2e-179 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10015559 [exp] 486 / 5e-160 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 366 / 8e-116 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076200 [exp] 1272 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 1269 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G440300 [exp] 593 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.001G151100 [exp] 592 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G155400 [exp] 583 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.011G010700 [exp] 343 / 5e-109 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.009G100500 [exp] 305 / 1e-91 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.007G045100 [exp] 303 / 5e-91 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G131500 [exp] 297 / 1e-88 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.004G173900 [exp] 295 / 5e-88 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0159 [flax] [poplar] E-set PF06280 [flax] [poplar] fn3_5 Fn3-like domain CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006973 pacid=23165417 polypeptide=Lus10006973 locus=Lus10006973.g ID=Lus10006973.BGIv1.0 annot-version=v1.0 ATGAGGATGGTGTACAATTTGTGTACATTCCTAGTCGTTGGTTTGTCACTCATCATTGATGGGGAAGCTCATGTTTATATGGTGATGATGGAGGAAGAGC CGGTAGTAAGCTATAGAGGAGGCGTTCCCGGTTTCGAGGCCACTGCTTCCGAATCGGATGAAAAGATCGACACAACTCGCGAGGCAGTCACATCGTATGC AACACACCTTGAGAAGAAGCACGATATGCTTCTCGACATGCTGTTCGATCAAGGATCGTACGAGAAGCTCTATAGCTATCGACACCTTATCAATGGCTTC TCGGTTCATATGGATCCTGAACAGGTAGAAACCTTAAGGCGCGCTCCCGGTGTGATATCGGTGGAACGAGATTGGAAAGTTCACCGGCTCACTACACACA CGCCGCAGTTCTTAGGCCTTCCTACGGGAGTTTGGCCAACTGGAGGTGGTTTCGACAGGGCCGGGGAAGATATTGTCATCGGATTTGTGGATTCGGGGAT TTATCCTCATCATCCTAGCTTTTCGACTCATCACACGGATCCGTATAGACCACTTCCCAAGTACAGGGGGAAATGTGAGGTTGATCCTCAGACTAGGAGG GAGTTCTGCAACGGGAAGATAATTGGAGCTCAACATTTCGCTGCTGCTGCGAAAGCTGCTGGCGTCTTTAATCCTGCTATCGATTTTGCATCGCCATTAG ATGGTGATGGACATGGAAGTCACATAGCAGCTATTGCAGCAGGAAACAATGGCATCCCGGTGAGAATGCATGGCCATGAGTTCGGGAAAGCAAGCGGAAT GGCTCCTCGTGCTAGAATTGCTGTGTACAAGGCTCTCTACCGGCTGTTTGGAGGCTTCATTGCTGATGTAGTGGCCGCGATCGATCAGGCTGTGTATGAT GGAGTGGATATACTGAGCCTTTCTTTGGGGCCAAACAGTCCTCCGGCAACAACGAAGACGACATATCTAAACCCGTTCGATGCCACACTATTGGCTGCTG TTAAAGCAGGAGTCTTCGTCGCTCAGGCAGCAGGAAACGGAGGTCCATTTCCGAAGACGATGGTCTCGTATAGCCCATGGATCACTTCTGTAGCTGCTGC AATTGATGACAGGAGATACAAGAATCACTTGACTATGGGCAATGGAAAAATCTTGCCTGGAGTCGGTTTATCACCATCTACACGCCTGAACAAGACGTAT ACGTTGGTATTCGCGAACGATGTTCTCCTAGACTCTTCGGTGATGAAGTACAGTCCTTCAGATTGCCAGAGACCCGAATTGTTCAACAGGAAGTTGGTCG AAGGGAGAATCCTCCTCTGTGGCTATTCTTTCAGCTTTGTTGCTGGTACATCGTCTATTAAGAAGGTCTCCGAGACTGCCAAAAAACTCGGTGCAGCTGG ATTCGTTCTCGCCGTGGAGAGTAATACACCAGGAGCGAAATATGATCCCGTGCCTGTTTGTACTCCCGGCATTGTGATCACGGATTCGCTCAAATCGGCG GATCTGATTGACTATTACAACATCTCAACACCAAGAGATTGGACTGGTAGAGTGAAGAGCTTCAATGCGGTCGGAAGCATTGGCGATGGCTTGATGCCTA TACTTCACAAATCTGCACCTCAGGTTGCTTTGTTCTCTGCTAGAGGACCCAACATCAAAGATTTCAGCTTTGGAGATGCTGACCTTCTGAAACCTGACAT CTTGGCTCCTGGCTCTCTGATTTGGGCTGCTTGGTCACCAAATGGAACAGATGAAGCAAATTTCATGGGAGAAGGATTTGCGATGATGTCTGGAACTAGC ATGGCTGCACCACACATAGCTGGAATAGCAGCTCTCATTAAGCACAAACACCCCGAGTGGAGCCCCGCGGCAATCAAGTCGGCCTTGATGACGACGTCCA ACGAGCTCGATAGAGCGGGAAGGCCTCTTCAGGCGCAGCAGTACTCCGATTCGGAAGTCATGAAGCTCGTTCGCGCCACCCCTTTCGATTATGGCTCCGG TCATGTCAACCCCAGGGCTGCTCTCGATCCTGGACTCGTCTTCGATGCAGGCTACGAGGATTACTTGGGGTTCCTATGCACAACCCCAGGGATTAACGCC CACGAGATAAGAAACTTCACAAACAAGCCATGCAACTACTCAATGGGCCACCCAACAAACTTCAACACCCCATCCATAACCGTGTCCCGTCTGGTCAGAA CCCAGACCGTTACTCGAACTGTAACCAACGTGGCCGACGAGGAGGAGACCTACGTGAACACCGCGCGAATGGACCCAGCCATCGCCATCGAGGTCCACCC ACCGGCCATGACACTGAAACCCGGTGCATCGAGGAAGTTGACGGTGAGTGTGACTGTCAGGTCGGTTACCGGTGGGTACAGTTTTGGAAAGGTTACGATG AAGGGCAGCCGCGGCCACCGGGTTAGGATCCCGGTTGCTGCAATGGGGTACTGGCGATGA
AA sequence Show only first row Show all	>Lus10006973 pacid=23165417 polypeptide=Lus10006973 locus=Lus10006973.g ID=Lus10006973.BGIv1.0 annot-version=v1.0 MRMVYNLCTFLVVGLSLIIDGEAHVYMVMMEEEPVVSYRGGVPGFEATASESDEKIDTTREAVTSYATHLEKKHDMLLDMLFDQGSYEKLYSYRHLINGF SVHMDPEQVETLRRAPGVISVERDWKVHRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFSTHHTDPYRPLPKYRGKCEVDPQTRR EFCNGKIIGAQHFAAAAKAAGVFNPAIDFASPLDGDGHGSHIAAIAAGNNGIPVRMHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAIDQAVYD GVDILSLSLGPNSPPATTKTTYLNPFDATLLAAVKAGVFVAQAAGNGGPFPKTMVSYSPWITSVAAAIDDRRYKNHLTMGNGKILPGVGLSPSTRLNKTY TLVFANDVLLDSSVMKYSPSDCQRPELFNRKLVEGRILLCGYSFSFVAGTSSIKKVSETAKKLGAAGFVLAVESNTPGAKYDPVPVCTPGIVITDSLKSA DLIDYYNISTPRDWTGRVKSFNAVGSIGDGLMPILHKSAPQVALFSARGPNIKDFSFGDADLLKPDILAPGSLIWAAWSPNGTDEANFMGEGFAMMSGTS MAAPHIAGIAALIKHKHPEWSPAAIKSALMTTSNELDRAGRPLQAQQYSDSEVMKLVRATPFDYGSGHVNPRAALDPGLVFDAGYEDYLGFLCTTPGINA HEIRNFTNKPCNYSMGHPTNFNTPSITVSRLVRTQTVTRTVTNVADEEETYVNTARMDPAIAIEVHPPAMTLKPGASRKLTVSVTVRSVTGGYSFGKVTM KGSRGHRVRIPVAAMGYWR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	0	1
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	1.4	0.8825
AT5G65630		GTE7	global transcription factor gr...		Lus10020470 [exp]	2.8	0.8645
AT1G06230		GTE4	global transcription factor gr...		Lus10034067 [exp]	3.7	0.8509
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	6.0	0.8546
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	6.6	0.8744
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	9.7	0.8568
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	11.1	0.8727
AT2G42520			P-loop containing nucleoside t...		Lus10016207 [exp]	11.8	0.8212
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	12.3	0.8057
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10032990 [exp]	15.5	0.8167

Compare expression of checked genes

Lus10006973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.