Plant FIBer expression Database

Lus10006974 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57370 121 / 4e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001311
[exp]
178 / 8e-57 AT5G57370 130 / 2e-38 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G091300
[exp]
122 / 1e-34 AT5G57370 103 / 3e-27 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08648 SNRNP27 U4/U6.U5 small nuclear ribonucleoproteins
Representative CDS sequence
>Lus10006974 pacid=23165434 polypeptide=Lus10006974 locus=Lus10006974.g ID=Lus10006974.BGIv1.0 annot-version=v1.0
ATGGCCGACAGAGACAGATACTTCGACCGTGACCGTGCTCGCGACAGAGACCGTGACCGAGACAGAGATAGGAGCCGGGAAAAGGAAGATCGAGATCGCC
TCCGTGACCGCGACCGAGATCGGGATCGCACTCGGAGCACGAGGTCGAGGACACGCTCTCCTGAACGAGATCGGGATCGCATGCGGAGCACGAGGTCGAG
AACTCGTTCGCCGGACCGAGCTCGAGCAAGGCGCATTCGTTCCCGAACTCGCTCGCCAAACAGGCACCAATCTAGGTCGCCGTCTTCTCACCGCCGCCAC
CGTCACCAGCGCACACCGTCGCCTTCGCCTCCGCGGAAGAGGCACCGTCACGAGACCGAGGAGGAACGTGAGAAGGACAGGCAGAGGTCTTCTGATTTTG
TGGACGGGAGCTCGAAGAGGAAAGACAACAGTAGCGGCGGTGCAGGAGTGGCCGAGGGAGATGGAAATAGTGCGGAGATGAACCAGGACGAGATGGAGAT
GATGAAGATGTTAGGAATTCCAACTGGTTTCGACTCGACCAAAGGGAAACCAGTTGACGGTGCCGATGTCAGCGGCGTCAGAGCAGTGAGTAAGCGGCAG
CCTAGGCAGTATATGAATCGCCGGGGAGGGTTCAATCGGCCGTTGCCTGCAGAGCGTAACCGATAG
AA sequence
>Lus10006974 pacid=23165434 polypeptide=Lus10006974 locus=Lus10006974.g ID=Lus10006974.BGIv1.0 annot-version=v1.0
MADRDRYFDRDRARDRDRDRDRDRSREKEDRDRLRDRDRDRDRTRSTRSRTRSPERDRDRMRSTRSRTRSPDRARARRIRSRTRSPNRHQSRSPSSHRRH
RHQRTPSPSPPRKRHRHETEEEREKDRQRSSDFVDGSSKRKDNSSGGAGVAEGDGNSAEMNQDEMEMMKMLGIPTGFDSTKGKPVDGADVSGVRAVSKRQ
PRQYMNRRGGFNRPLPAERNR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57370 unknown protein Lus10006974
[exp]
0 1
AT4G24730 Calcineurin-like metallo-phosp... Lus10019465
[exp]
2.0 0.9116
AT5G57370 unknown protein Lus10001311
[exp]
2.0 0.9227
AT5G49400 zinc knuckle (CCHC-type) famil... Lus10037745
[exp]
2.4 0.9098
AT5G49400 zinc knuckle (CCHC-type) famil... Lus10037744
[exp]
3.2 0.8920
AT5G36950 DEGP10 DegP protease 10 (.1) Lus10008727
[exp]
4.6 0.8742
AT1G01290 CNX3 cofactor of nitrate reductase ... Lus10033117
[exp]
4.9 0.8326
AT3G62980 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1... Lus10018426
[exp]
7.7 0.8440
AT1G17370 UBP1B oligouridylate binding protein... Lus10027641
[exp]
8.1 0.8379
AT5G01340 AtmSFC1 mitochondrial succinate-fumara... Lus10005045
[exp]
10.0 0.8317
AT1G13220 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI... Lus10034383
[exp]
10.5 0.8455

Lus10006974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.