Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30310 902 / 0 FGGY family of carbohydrate kinase (.1.2.3) AT1G80460 69 / 5e-12 GLI1, NHO1 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001312 [exp] 870 / 0 AT4G30310 758 / 0.0 FGGY family of carbohydrate kinase (.1.2.3) Lus10024516 [exp] 128 / 5e-35 AT4G30310 94 / 7e-24 FGGY family of carbohydrate kinase (.1.2.3) Lus10035914 [exp] 69 / 4e-12 AT1G80460 845 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2) Lus10025750 [exp] 44 / 0.0003 AT1G80460 760 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G095700 [exp] 956 / 0 AT4G30310 989 / 0.0 FGGY family of carbohydrate kinase (.1.2.3) Potri.003G030900 [exp] 64 / 2e-10 AT1G80460 833 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00370 [flax] [poplar] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [flax] [poplar] Actin_ATPase PF02782 [flax] [poplar] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006975 pacid=23165432 polypeptide=Lus10006975 locus=Lus10006975.g ID=Lus10006975.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGCCAGCTGGCAAAAAGAAAGGGTGGTCCGATACTACTCCACTCCTCCGCCAAGGCGCTTCTCCTCCTCCGCCATCCTACCACTCATCCT CCTCCTCTCCTTTCTTCGTCGAGATGTCCTCCCCCGCCGTCACCTCGCCTCGCCGCTCAGGCAGCCTCTTCCTCGGCGTCGACGTCGGCACCTCCAGCGC CCGCGCCGGAGTGTTCGATGACAGAGGGAAGCTACTAGGCACGGCGAGTAGTCCTATCCAGATTTGGAAAGAAGGCGATATCGTTGAGCAATCGTCGACA GATATTTGGCATGCGGTGTGTGCGTCGGTTAAGTCGGCTTGCTCTGTTGCTAAGGTTGCTGGCCATGAAGTGACCGGGATTGGATTCGCTGCTACTTGTT CCCTTGTTGCGGTTGATTCTGATGGTGCTCCGGTTACTGTATCGTGGAGTGGAGATTCAAGGAGGAATGTCATTGTGTGGATGGATCACAGAGCTGTCAA ACAAGCTGAAAAGATCAATTCGTTTAAATCTCCAGTACTGGAGTACTGTGGTGGTGCTGTCTCTCCTGAAATGCAGCCACCCAAGCTACTATGGGTGAAA GAAAATTTGCCAGAGTCGTGGTCGATGGTGTTCAGGTGGATGGACTTGAGTGATTGGTTGTCCTACAGAGCCACTGGAGATGATACTCGAAGTCTGTGCA CAACAGTGTGCAAATGGACGTATCTTGGTCATGCACACATGCAACAGATGAATGAGAATAATTCTAGGGACATGGAAGCTTGTGGATGGGATGATGACTT TTGGGAAGAAATTGGCTTGGGCGATCTTTTGGAGGGTCATCATGCTAAGATTGCAGGAATTCCAGTCGGGACTTCTTTGATTGATGCCCATGCTGGTGGG GTAGGGATCATGGAAAGCATCCCTGGGCTGGATTCTGAGGCTAAAGAGTCTGATAAGGAAGCTGTAAGTTGCCGTATGGCATTAGTCTGTGGTACTTCTA CGTGTCATATGGCCGTGTCAAGGAGCAAGCTGTTCATTCCAGGGGTGTGGGGCCCTTACTGGTCAGCAATGCTGCCCGAGTATTGGCTTACAGAAGGTGG ACAGAGTGCTACTGGGGCATTATTGGATTACATAATTGAAAACCATGTCGCTTCTCCTCAACTTGCAGATCGAGCTGCATCCCAAAAGACTTCTATCTTT GCGTTGTTAAACAATATCTTACAAACTATGATGGAGGAAAGGAAGTCTCCATTTCTAGCTGCTTTGACTGAAAACACCCACGTTCTTCCCGACTTCCATG GAAACAGGTCTCCTATTGCAGACCCTAAATCGAAGGGAATCATTTGCGGCCTGACACTCGACACAAGCGAGAGACAGTTAGCTCTTCTGTACCTTGCCAC GGTACAAGGAATTGCTTATGGTACACGGCATATTATGGAGCACTGCAACGCTCATGGCCACAGGATCAACACATTGCTGGCTTGTGGTGGTCTCTCCAAG AACTCCCTTTATATCCAAGAACATGCAGATATCCTCGGTTGCCCTGTTGTTCTGCCTCGTGAAAGTGAATCCGTGCTCTTGGGAGCTGCAATTCTTGGTG CAGTTGCTGCAAAGAAATACGCCACCCTCATGCAAGCCATGAAAGCTCTCAACGCGGCTGGCCAGGTCGTTCGACCATCGCAAGACTCAAAGGTGAAGAA GTTCCACGACGCCAAGTACAAAATATTCCGGGAGCTTTACGAGCAGCAGCTGTCTCAACGTTCAGCCATGGCCAAAGCCTTGGAGTAG
AA sequence Show only first row Show all	>Lus10006975 pacid=23165432 polypeptide=Lus10006975 locus=Lus10006975.g ID=Lus10006975.BGIv1.0 annot-version=v1.0 MSSSPAGKKKGWSDTTPLLRQGASPPPPSYHSSSSSPFFVEMSSPAVTSPRRSGSLFLGVDVGTSSARAGVFDDRGKLLGTASSPIQIWKEGDIVEQSST DIWHAVCASVKSACSVAKVAGHEVTGIGFAATCSLVAVDSDGAPVTVSWSGDSRRNVIVWMDHRAVKQAEKINSFKSPVLEYCGGAVSPEMQPPKLLWVK ENLPESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNENNSRDMEACGWDDDFWEEIGLGDLLEGHHAKIAGIPVGTSLIDAHAGG VGIMESIPGLDSEAKESDKEAVSCRMALVCGTSTCHMAVSRSKLFIPGVWGPYWSAMLPEYWLTEGGQSATGALLDYIIENHVASPQLADRAASQKTSIF ALLNNILQTMMEERKSPFLAALTENTHVLPDFHGNRSPIADPKSKGIICGLTLDTSERQLALLYLATVQGIAYGTRHIMEHCNAHGHRINTLLACGGLSK NSLYIQEHADILGCPVVLPRESESVLLGAAILGAVAAKKYATLMQAMKALNAAGQVVRPSQDSKVKKFHDAKYKIFRELYEQQLSQRSAMAKALE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30310			FGGY family of carbohydrate ki...		Lus10006975 [exp]	0	1
AT5G55060			unknown protein		Lus10021546 [exp]	4.2	0.9006
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	5.0	0.9111
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	6.2	0.8753
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	6.7	0.9002
AT2G26210			Ankyrin repeat family protein ...		Lus10034882 [exp]	8.8	0.8377
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	10.6	0.8747
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	13.9	0.8884
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	15.1	0.8766
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	15.9	0.8958
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	20.0	0.8714

Compare expression of checked genes

Lus10006975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.