Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57610 1010 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 458 / 4e-144 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 460 / 1e-143 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT3G24715 457 / 7e-143 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 458 / 4e-142 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 452 / 9e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 442 / 1e-136 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49470 207 / 1e-57 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 206 / 3e-55 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 199 / 6e-53 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001315 [exp] 1192 / 0 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 772 / 0 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 446 / 4e-148 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 453 / 3e-146 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 453 / 1e-141 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 451 / 2e-139 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 454 / 5e-139 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 364 / 4e-108 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 197 / 3e-52 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170700 [exp] 1329 / 0 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 1281 / 0 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 456 / 7e-141 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 457 / 1e-140 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 457 / 3e-140 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G176100 [exp] 447 / 3e-139 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.005G095200 [exp] 448 / 2e-138 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 450 / 1e-137 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 442 / 1e-137 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.007G069500 [exp] 444 / 5e-137 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10006977 pacid=23165427 polypeptide=Lus10006977 locus=Lus10006977.g ID=Lus10006977.BGIv1.0 annot-version=v1.0 ATGGATACGCCAACTTCTGCAACTAATTCCAACCCTAGTACTACTGACTTCCGCAGCGACGAAGCTCCACGGGTCAAGTTTCTATGCAGCTTCTTAGGTA ACATAATGCCTCGTCCGCAAGACGGGAAATTGCGGTACGTGGGAGGGGAGACAAGGATTGTGAGTTTGTCTAGGGACATTGGGTATGAGGAGCTGATGAG TAAGATGCGGGAGCTTTACGATGGCGCGGCTGTGTTGAAGTATCAACAGCCCGATGAGGATCTGGATGCATTGGTTTCGGTTGTGAACGATGATGATGTG ACGAATATGATGGAGGAGTATGAGAAATTGGGGTCTGGAGATGGGTTCACGAGGCTTAGGATATTCTTGTTTTCTCAGTCGGAGCAAGATGGGTCGCCGC ATTTTGTTGACGGTGGGGATGATAGGGAGACTGAGAGGAGGTATGTTGATGCGCTGAACAATTTGAATGAGGGGAGAGTGCAGATCGATTCGCCGACTTT GATGGGAGGAGTTGATGATGTGCATTTACAGGAACAGTTTTTTGGTCGTATGAGTCTTGATGGTGGTGTTGGTGGTGGGATTCATGGTCTGAGGAGTCAT GATACACCATTACCGCAGTATAATTTGCGGCATGTTGCTGTTCCTCAGAGATACAGTGAGATGGAAGGTCCATGGAGCCCTGCTGCATATTATTCTCCTA GGCATCATGGTGGGCATCCTGACTCGAGATCGTTGTTGGAGTTTCCGAATTCTCCTCCTTCTGCTCGTTATCGTATGCCCTTCGGGGAAGTGGGTCCGGA GACTGTGGCGTGGATGCACGGTGGAGGTGTATCCGGTGATAAAGCTGGCTTTCCAGGTAATTTGCTGCATGGTCAAGGTGTTAAGGAAGGTAATAGCTCC GCCTGTGATCACTGTCATGCCCCTTCTCAAAGAAGTCAGGTGGGTTTCGACCAGACTAATATGGGAAACGGTCTCCCCCATGCTGCTAATTCTTGTAATG AGTACACGCCGAATCGGGAGGCTTTCATGGGACATCCGGATCCAAATGTGCACCATCCAGATCCCCGGAATGCCTATAATGAGTCTCGTGGACATGAAAG GGGATGGGTTTTGCAGCATCAAGCGAGCCCTCGAACTGATGAGGCTAGATCGCATCTCTCTGGAGCTGGAAGGTTCAACGAACATTACATCGTTGATGGT CCTGGCTTGAATTATTCCCTCGGGCATGGAGGTTTCGTGGATGGCCATCATGTTTCTTCTAGTTATGCTCCCCACCGAGCTGGTCCTGACATGGGTAATG AAGCATTTCCGGATCCATCTGTGACTCATGGACATCGCCAACATGTTGCACCGGTTGATGACCGTGGCATCAGATATGGGAATTTTCCTGGTGCTTATGG GACTGAAACTGTCTATCAGATGCCTCATGGGCATGCACATGGACAGAGTTTGTGGAGAAATGTACCAAATCCCATGCTCGGAGGTCCTTTTGATGCATCC ACCGGAACACCTCAAGTTACTGGTACAGTTAACCCTGCATATATCAGAGGTACAGTAGAGGGAGGTCCAAGGGTTGGAGCTGTTGGCATTGATGCTCAGC AACCTTGGTCCGACTCTTCACAAGCGAGGTTGGGTTTAGATGCCATGCCGGTTCCAGATTATGCTTATGCCCCTACTTTGAGAACTAATGCAGCTAACTG TGGTGTTGAAACTAGTAACCCAATTGCTCCAGAATCCACTCGTCATCCACTTCCACGTGAAATGACAAATTCACTTGCTCCTATAGCCACTGTTGGTCGC ATGCATAGTGGATTCGGCAGCACCGGTGTCCCTGAATTGGCAAAACATGAAGTGACGAATGTTGCAGGCACAGAAGTAGATGCAATTTATGCAGATAAAT CGAATATGGTTCATGTTGCCGATACAAATCCTGAAGCAGCTTTGGTGAATTTGTCGCACTCAAACAACGTAAGGAATCCTAATGAAAGCAATCTCATGCA AGTAGGCGACAAGAACCCTTCTGCTTCTGATGGGGTCTCAAAGCTATCTGTTGATGGCTTAAGTTACTTACCCGAGTTAATTGCCTCTGCAAAGAAAGCT GCATTGGAAGAGGCAGAGGAAGTGAAAGCGAGAGTTGAAGAAGATGCCTCCCACTTGAAGGATAACACAGTGTCAAAAGAAGCTACTTTGAAGGAGCCTG AAGCAGTGAATGGCAATGAAGAAGTAGAGTTAGATCATGAAAGTGATAATTCAAACCTCAACAAGATTGAGCCCACGAAGGCTGAGGCAGAAGCTATCGA AAGGGGATTACAGACTATAAGAAATGACGATCTGGAGGAGATTCGTGAATTGGGTTCAGGAACTTATGGAGCTGTATATCATGGGAAATGGAAGGGCTCT GATGTGGCGATAAAAAGAATCAAGGCTAGTTGTTTTGCTGGGAGACCTTCTGAGAGAGCTCGACTGATTGCAGATTTTTGGAAGGAAGCATTGATATTGA GTTCGCTTCATCATCCCAACGTCGTCTCTTTCTATGGTATAGTTCGTGATGGACCTGATGGGTCTCTAGCAACCGTAACAGAGTTCATGGTCAATGGTTC TTTGAAACAATTTTTGCAGAAAAAGGACAGGACCATTGACAGGCGCAAAAGACTCATCATAGCAATGGATGCAGCATTTGGCATGGAGTATCTGCACGGG AAGAATATTGTTCATTTTGATCTGAAATGTGAAAACCTCTTGGTAAATATGAGAGACCCGCAACGGCCAATCTGCAAGATTGGTGATTTGGGCTTATCTA AAGTCAAACAGCAAACACTTGTATCCGGCGGGGTTCGTGGAACTCTACCCTGGATGGCCCCTGAGCTTCTTAGTGGGAAAAATCACATGGTAACTGAGAA GATTGATGTTTACTCCTTTGGGATTGTGATGTGGGAACTGCTGACTGGTGAAGAACCTTATGCTGATATGCATTGTGCCTCAATAATAGGAGGGATCGTT AACAACACGCTACGACCAAAGATTCCAACTTGGTGCGATCCCGAATGGAAATCTTTGATGGAAAGTTGCTGGGCTTCTGAGCCGGCAGACAGGCCATCGT TTTCCGAAATCTCTCGAAAGCTCAGGACCATGGCTGCTGCAATCAACGTGAAATAA
AA sequence Show only first row Show all	>Lus10006977 pacid=23165427 polypeptide=Lus10006977 locus=Lus10006977.g ID=Lus10006977.BGIv1.0 annot-version=v1.0 MDTPTSATNSNPSTTDFRSDEAPRVKFLCSFLGNIMPRPQDGKLRYVGGETRIVSLSRDIGYEELMSKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDV TNMMEEYEKLGSGDGFTRLRIFLFSQSEQDGSPHFVDGGDDRETERRYVDALNNLNEGRVQIDSPTLMGGVDDVHLQEQFFGRMSLDGGVGGGIHGLRSH DTPLPQYNLRHVAVPQRYSEMEGPWSPAAYYSPRHHGGHPDSRSLLEFPNSPPSARYRMPFGEVGPETVAWMHGGGVSGDKAGFPGNLLHGQGVKEGNSS ACDHCHAPSQRSQVGFDQTNMGNGLPHAANSCNEYTPNREAFMGHPDPNVHHPDPRNAYNESRGHERGWVLQHQASPRTDEARSHLSGAGRFNEHYIVDG PGLNYSLGHGGFVDGHHVSSSYAPHRAGPDMGNEAFPDPSVTHGHRQHVAPVDDRGIRYGNFPGAYGTETVYQMPHGHAHGQSLWRNVPNPMLGGPFDAS TGTPQVTGTVNPAYIRGTVEGGPRVGAVGIDAQQPWSDSSQARLGLDAMPVPDYAYAPTLRTNAANCGVETSNPIAPESTRHPLPREMTNSLAPIATVGR MHSGFGSTGVPELAKHEVTNVAGTEVDAIYADKSNMVHVADTNPEAALVNLSHSNNVRNPNESNLMQVGDKNPSASDGVSKLSVDGLSYLPELIASAKKA ALEEAEEVKARVEEDASHLKDNTVSKEATLKEPEAVNGNEEVELDHESDNSNLNKIEPTKAEAEAIERGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGS DVAIKRIKASCFAGRPSERARLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLQKKDRTIDRRKRLIIAMDAAFGMEYLHG KNIVHFDLKCENLLVNMRDPQRPICKIGDLGLSKVKQQTLVSGGVRGTLPWMAPELLSGKNHMVTEKIDVYSFGIVMWELLTGEEPYADMHCASIIGGIV NNTLRPKIPTWCDPEWKSLMESCWASEPADRPSFSEISRKLRTMAAAINVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57610			Protein kinase superfamily pro...		Lus10006977 [exp]	0	1
AT5G57610			Protein kinase superfamily pro...		Lus10001314 [exp]	1.0	0.8888
AT5G57610			Protein kinase superfamily pro...		Lus10001315 [exp]	1.4	0.8763
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	7.7	0.8434
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	11.3	0.8240
AT3G55420			unknown protein		Lus10040295 [exp]	24.5	0.7976
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	27.0	0.8020
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	27.7	0.8099
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029513 [exp]	29.7	0.8161
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	30.4	0.8081
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	31.2	0.8103

Compare expression of checked genes

Lus10006977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.