Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13120 383 / 5e-121 EMB1745 embryo defective 1745 (.1) AT5G52450 299 / 6e-91 MATE efflux family protein (.1) AT1G73700 272 / 3e-81 MATE efflux family protein (.1) AT2G34360 267 / 3e-79 MATE efflux family protein (.1) AT1G71140 252 / 7e-74 MATE efflux family protein (.1) AT1G15170 218 / 9e-62 MATE efflux family protein (.1) AT1G15150 218 / 1e-61 MATE efflux family protein (.1) AT1G15160 216 / 6e-61 MATE efflux family protein (.1) AT1G15180 207 / 5e-58 MATE efflux family protein (.1.2) AT1G61890 207 / 1e-57 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001317 [exp] 936 / 0 AT1G13120 481 / 1e-162 embryo defective 1745 (.1) Lus10001318 [exp] 575 / 0 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10029668 [exp] 292 / 5e-89 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10041994 [exp] 281 / 5e-84 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10019492 [exp] 253 / 6e-74 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10017998 [exp] 249 / 4e-72 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10017949 [exp] 234 / 2e-67 AT5G52450 402 / 2e-136 MATE efflux family protein (.1) Lus10018136 [exp] 234 / 6e-67 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10019470 [exp] 231 / 3e-66 AT5G52450 378 / 5e-127 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183500 [exp] 598 / 0 AT1G13120 309 / 1e-96 embryo defective 1745 (.1) Potri.006G170900 [exp] 399 / 1e-128 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 399 / 2e-128 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.012G051900 [exp] 322 / 2e-99 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 303 / 1e-92 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 253 / 3e-74 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 232 / 1e-66 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.010G117000 [exp] 226 / 3e-64 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 221 / 1e-62 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.019G075800 [exp] 216 / 2e-61 AT1G71140 407 / 2e-139 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07817 [flax] [poplar] GLE1 GLE1-like protein CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10006979 pacid=23165437 polypeptide=Lus10006979 locus=Lus10006979.g ID=Lus10006979.BGIv1.0 annot-version=v1.0 ATGGGGAGCGCATTGGAGACACTATGCGGCCAATCGCACGGAGCAAAGCAATACAGCACGATCGGAATCCACCTCCAGCGATCCCTAATCGTACTCCTCC TTGCCGCAATCCCGCTCTCCTTCGCATCAGCCTATGCCGGCGAGATCCTCCTCTTCCTCGGCCAGGATCCAGAGATATCAATCTCTGCCGGAAGCTACGC CAAGTTCGTGATCCCTAGCATTTTTGGGTTCGCGATCCTCGAATCTCACGTCAAGTTCCTGCAGTCGCAGAACAACGTGCTGCTTCTGACGTCGACGACC AGAATCACGACTCTGCTGCACGTTCTGGTGTGCTGGACTCTGGTTTTCAAGTCCGGATGGGGGAACAGGGGAGCTGCGATCGCGAACGGGATCGCGTATT GGATCAATGGCATCTCGTTGTTCGTTTACGTTAGGGTTTCGAGGAGCTGTAAGAGTTCTTGGACTGGTTGGTCTAGAGAGGCGTTGCATGGAATTCCTGG GTTTGTTAGATTGGCGGTTCCTTCTGATATAATGCTCAGCTTGGAGATTTGGTCATTTGAGATGATGGTTCTGTTGGCCGGTTTGCTTCCGAATCCAAAA CTAGAGACGTCGGTTCTTTCCATAAGCTTGAACACAACTGCAATCATCTACATGATACCACTTAGAATTAGTGCTACAGCTAGTACAAGGGTTTCAAATG AACTGGGTGCCGGGAGACCAAGAGCAGCTCTGCTAGCTGTTTATGTCTCGGTGGCCATTGTCGTGACCGAAGCAATTTTCGCAGCAGCAGTCATGGTATT AGGGCACAATGTCTGGGGTTACTTGTACAGCAAGGAAGAGGAACTAGTGAAGTACGTAGGAGAAATGACATTGATAGGTGCTGCTTTCCACTTGTTCGAT GGCATCCAATCGGTCCTCTCAGTACTGGCTTTTGTCTGCCACTGGGGAGGAAAGGGTCTTTGGACAGGCATCACCGTAGCAGTGTTCTCACAGGCTGTGT TCATGACAATATTGACTATCAACACTGATTGGGAGAAAGAGAGGCAAAAGAAATCATCTTCATCGCTCGTCGGTCTTCCCCTCGCCGTTCCTCATTGCAG GAGTCCTTTCTCCATCGTTGCAGCTCTTCCTCGCCGTCGGCCGCAGGGACCTTTGAAATTGGAACTTCGTTGTTCACAGAAAGTGCATGAGATTGCACCT GATCCCCAGCCGGACTGGAGCTTTGATTCACTGCTGCTGGAACTTGATTCGCTTGAAAAGAAGCTTGCTTCTTCCTCCAGTTTCCCAGTACCCTTTACTA AGAATCAGTCTCGGGGGATTGCAAATCGGAAAACTGGTGACAGTCTGGAGAGGCCTGTGGCGTTTTCCATGAGGCTGTCTGAAGAGGAGCTAGAATTTTC TGATGATGATGATGATGATGAAGGGAATGATGATAATAGATGTTTGGTAGCAGCTGAAAGGGTCAATTTTGATTCTTTTTATGAAAGTGAGACTGATGAT TCGGACCAGGAGTTTGGTCTTGATGTCCAACCCTACTTGATGGATGAAGTTGGGTTAGTCGAAGGTGCGCTGCTTGAACGAAGTCATGATCATCAACTTG AATTGAAGGAGGAGATTAGAAGCCAAATCTCTGCGGTGGAGATGGAGTTGATGGGTAAAAGTCAGAAGCATTCTCAAGCATTTGCTCGCATTGACAAGTA TCCTGAAGCAAGAAGGGAAACAGACTGGAAATTCGACACTCTATACCAGCGTAAAATTGCAGAAGCACTTGATGATCACTTGACTGCTATTCAGCGGGAT CATGAACTCAAATCTCAGATAGAAGAAAGAAGAATAAGGAGTGATGCAGCTTACGAAGAGGCAAAGAGAAAAGAACGGGCCATTCAAGAAGATAGAATAC GTCAAGAAAGAGCCAGAGAAGAAGCTGAGGCTAAACGTAGAACCGAGGAAGCAAAAGCAGCTGCATTGGAAGCAGAAAACAAAGAAAAAGAGGAGGCAGC GAAAAGGGAAGCTTTGAAAAATGCTACTGCTGTTGTTTCTTCTGTGCAAGCTACGAATCTGGATACACAGTCACAGCCATCCAAATCTGATGGTACTCAA ACTTCACTGTCTAAAGGTCAAATAGTTAGAGCTTCTGAAGCAGCTCTTGCTCTGGAAGAAGCAAGGTTGCAGAAGCTTAGAGACCTTAACGAGAATAACC AGTCTATCATGTCAAGACCCAATACGAATTTTACTGCCCAGGAGAGGCATATCACGAGAATAATTAAACAGATTCAGGAAATAGAAGAAAACGTTAGAAC AAAAACAAGCGATCTAATGCAGATTTTCAACAACCCTTCATGCCCTCAGTCCATCTCTGTCGCAGCCTTTGCAAAGAAGGTTGTTGCACATTGTGAAAAC CCTAGCATTTCTGCATTTGCATGTGCGCAAGTAATCATCCGCATAACTTCTCAGATCCCATACACAATGGATGTCATTCTTGCTGAACTCCATAAAGCTT GTATCTACACCGTCCCGAAGCATGTAGCATACTCGCAGGCAGCATTCAGTAGCAAGGACTATTACATAAACCACCTCGGGTTTAAGGAAGAAGATGGAAA AATCGAGAGTGTCGAGAATTACTCGGACCGTATGAAAGCGTACATGACCCTATACGGAGCACTAGTCCAGACCGAAGTACACGGTTTTCAGAGCCCTCAC GGCTCGAAAGAAGGTTGGTCGTGGCTAGCCAGGTTCTTAAACTCTCTCCCTGCAAATGCATTCACCGCGGTGGCGTTAAATGCGTTCCTCCAAACAGCAG GGTTTGTGATGTACAGAAAGTACAAGTCCCAGTTCGCGAAAATGCTGCACATTGTGCTGAACGACTTCGTAAAGGGGTTGAAAGGTCGAAACAACAATGA TCTGAGCCCTATAGTTGCGGAGATCGAGTCGTACATTCAAGACAAGAGGTTTCTGAAGGAGCCAGAAGCGAGGAGGATGGAAGATAAGCCTTCACTTTCG AGCCAGACCTTAAGGAATTCGGAGTACGATAATTCATATTACCGGCAGTGA
AA sequence Show only first row Show all	>Lus10006979 pacid=23165437 polypeptide=Lus10006979 locus=Lus10006979.g ID=Lus10006979.BGIv1.0 annot-version=v1.0 MGSALETLCGQSHGAKQYSTIGIHLQRSLIVLLLAAIPLSFASAYAGEILLFLGQDPEISISAGSYAKFVIPSIFGFAILESHVKFLQSQNNVLLLTSTT RITTLLHVLVCWTLVFKSGWGNRGAAIANGIAYWINGISLFVYVRVSRSCKSSWTGWSREALHGIPGFVRLAVPSDIMLSLEIWSFEMMVLLAGLLPNPK LETSVLSISLNTTAIIYMIPLRISATASTRVSNELGAGRPRAALLAVYVSVAIVVTEAIFAAAVMVLGHNVWGYLYSKEEELVKYVGEMTLIGAAFHLFD GIQSVLSVLAFVCHWGGKGLWTGITVAVFSQAVFMTILTINTDWEKERQKKSSSSLVGLPLAVPHCRSPFSIVAALPRRRPQGPLKLELRCSQKVHEIAP DPQPDWSFDSLLLELDSLEKKLASSSSFPVPFTKNQSRGIANRKTGDSLERPVAFSMRLSEEELEFSDDDDDDEGNDDNRCLVAAERVNFDSFYESETDD SDQEFGLDVQPYLMDEVGLVEGALLERSHDHQLELKEEIRSQISAVEMELMGKSQKHSQAFARIDKYPEARRETDWKFDTLYQRKIAEALDDHLTAIQRD HELKSQIEERRIRSDAAYEEAKRKERAIQEDRIRQERAREEAEAKRRTEEAKAAALEAENKEKEEAAKREALKNATAVVSSVQATNLDTQSQPSKSDGTQ TSLSKGQIVRASEAALALEEARLQKLRDLNENNQSIMSRPNTNFTAQERHITRIIKQIQEIEENVRTKTSDLMQIFNNPSCPQSISVAAFAKKVVAHCEN PSISAFACAQVIIRITSQIPYTMDVILAELHKACIYTVPKHVAYSQAAFSSKDYYINHLGFKEEDGKIESVENYSDRMKAYMTLYGALVQTEVHGFQSPH GSKEGWSWLARFLNSLPANAFTAVALNAFLQTAGFVMYRKYKSQFAKMLHIVLNDFVKGLKGRNNNDLSPIVAEIESYIQDKRFLKEPEARRMEDKPSLS SQTLRNSEYDNSYYRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	0	1
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	2.8	0.8233
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	5.2	0.8141
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001047 [exp]	5.5	0.7912
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	6.5	0.8144
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	14.5	0.7463
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	19.2	0.7989
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	19.2	0.8093
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10001317 [exp]	19.3	0.7574
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	20.6	0.7640
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	23.0	0.7665

Compare expression of checked genes

Lus10006979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.