Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 370 / 4e-126 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G51180 323 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29120 263 / 1e-83 Hydrolase-like protein family (.1.2.3.4.5) AT1G09980 49 / 6e-06 Putative serine esterase family protein (.1.2) AT1G58350 47 / 2e-05 ZW18 Putative serine esterase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001320 [exp] 669 / 0 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032496 [exp] 327 / 8e-110 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042993 [exp] 312 / 2e-103 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001893 [exp] 254 / 3e-80 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10013909 [exp] 249 / 3e-78 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096035 [exp] 493 / 4e-174 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 357 / 2e-120 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 318 / 2e-106 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G151300 [exp] 315 / 3e-105 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G065700 [exp] 256 / 5e-81 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Potri.019G077700 [exp] 44 / 0.0002 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 42 / 0.001 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05057 [flax] [poplar] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Lus10006982 pacid=23165403 polypeptide=Lus10006982 locus=Lus10006982.g ID=Lus10006982.BGIv1.0 annot-version=v1.0 ATGATTCGACCCGACTGCCACCTTCGACCCGCTACTACGCCACAACCCCTTAATATTCCTCCAGCTTCATCCACCGCCGCCCGATCTTCTCTCCGGCTCG TTTCCACGGCCGGATCCGGATCTCCCCGGCGGCGGCGCTTGTACAGCATGTCGCCGGTTGGTTGCTTCGGTACTGGGAGGAGGACGGCGACGAAGAGCGG CGGGTTGAAAGTGGAGATTGATAGTGGCGGGGAAGATGTTTTCAATTCTAAATCTAGGGTCTTCCCTGAACATCTCGTCATCATGGTCAATGGGCTCATC GGAAGCTCTGCGGATTGGAGGTATGCAGCAGGGCAGTTTGTGAAGAAGCATCCGGATAATCTGATTGTGCATAGGAGTGAATGCAATTCGTCAAAGTTGA CATTCGACGGTGTAGATTTGATGGGTGAAAGGCTGGCCGAGGAGGTACAATTGGTTGTCCGGCGTCGGCCTGAGGTGCGGAAGATCTCGTTTGTTGCTCA CTCATTAGGTGGACTCATTGCAAGGTACGCTGTAGCGAGGCTGTATGAGCAAATACCAAAGACGGCTCATTCGGGAGGTGGAATGCAACAAGGTCTTGAT CAGCCTTATGAAGCTAGGATTGCGGGGCTGGAACCTATTAACTTCATAACCTTTGCATCTCCCCATCTTGGTTCGCGGGGACATAAGCAGTTCCCAATTC TCTGTGGCCTTCCATTTCTTGAGAGGAGAGCATCTCAGACTGCCCACTTAGTTGCTGGGAAGACTGGAAAACATCTTTTCCTTACTGATCATGACGAGGG AAAACCACCTCTTCTCCTACGAATGGTGAACGATTCCAATGACTTAAAATTCATATCAGCTTTGCGCTCATTCAAACGCCGGGTGGTTTATGCAAACGCT AATTTCGATTATATGGTTGGATGGGGAACATCATCGATCAAGCGTCAAGATGAATTACCCAAGTCAACTGCTCTTGTACTTGATGAGAAATATCCACACA TAGTCTACATTGAGCCTGAAAATACAGGAAACAAGCTTGAGAAGTCGCCTTCCTATCGTCCCGTGGACCAGACAACAGATCTAGAAGAGATGATGATCAA AGGTCTTACTCAAGTACCTTGGGAGCGAGTGCACGTTAGTTTCCACAAAAGCAGGCAACGGTTGACTGCTCACAATACCATTCAGGCAAGTGAAGAGCTA CTGGTTGAATTCAGATGGCGCCGACGTGATCTTCCATATGATAGATAA
AA sequence Show only first row Show all	>Lus10006982 pacid=23165403 polypeptide=Lus10006982 locus=Lus10006982.g ID=Lus10006982.BGIv1.0 annot-version=v1.0 MIRPDCHLRPATTPQPLNIPPASSTAARSSLRLVSTAGSGSPRRRRLYSMSPVGCFGTGRRTATKSGGLKVEIDSGGEDVFNSKSRVFPEHLVIMVNGLI GSSADWRYAAGQFVKKHPDNLIVHRSECNSSKLTFDGVDLMGERLAEEVQLVVRRRPEVRKISFVAHSLGGLIARYAVARLYEQIPKTAHSGGGMQQGLD QPYEARIAGLEPINFITFASPHLGSRGHKQFPILCGLPFLERRASQTAHLVAGKTGKHLFLTDHDEGKPPLLLRMVNDSNDLKFISALRSFKRRVVYANA NFDYMVGWGTSSIKRQDELPKSTALVLDEKYPHIVYIEPENTGNKLEKSPSYRPVDQTTDLEEMMIKGLTQVPWERVHVSFHKSRQRLTAHNTIQASEEL LVEFRWRRRDLPYDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	0	1
AT3G56200			Transmembrane amino acid trans...		Lus10042864 [exp]	1.7	0.9614
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	2.4	0.9618
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	2.6	0.9664
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	3.9	0.9576
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	6.0	0.9567
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	6.3	0.9506
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	6.6	0.9504
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	7.2	0.9590
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10039616 [exp]	7.9	0.9400
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	8.3	0.9431

Compare expression of checked genes

Lus10006982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.