Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57655 746 / 0 xylose isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001321 [exp] 893 / 0 AT5G57655 828 / 0.0 xylose isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096049 [exp] 778 / 0 AT5G57655 813 / 0.0 xylose isomerase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01261 [flax] [poplar] AP_endonuc_2 Xylose isomerase-like TIM barrel
Representative CDS sequence Show only first row Show all	>Lus10006983 pacid=23165429 polypeptide=Lus10006983 locus=Lus10006983.g ID=Lus10006983.BGIv1.0 annot-version=v1.0 ATGATCAAGATGAAGGGCTCGAGGATTTTGTTGCTTCTCCTGTGTTTGATTGTTGCCGCTTATACAGTGATTGCTGCTGCACCACCGACTTGCCCAGCAA ATCTCGAGGGAGGATGTGGCGATTCGGATGAATGGAAAGGCGAATTCTTCCCTGGAATTCCCCAAATTAAGTATGAGGGTCCTAATACTAAGAACCATCT TGCATACAAATGGTACAATGCTGAAGAAGTCATTCTGGGGAAGAAAATGAAGGATTGGATGAGATTCAGCGTCGCGTTCTGGCACACGTTCCGCGGTGTT GGAGTCGATCCTTTCGGTGGACCTACCAAGTTCTGGCCTTGGGAGGATAGTACTAATTCAGTGGCTATGGCCAAAAGGAGAATGAGAGCCAACTTTGAGT TGTTGGAAAAGCTTGGAGTAGACTACTGGTGTTTCCATGATAGGGATATTGCTCCTGAGGGAAACACTCTTAAGGAAAGTAATGCAAACTTGGATGAAGT GGTGGCTCTTGCTAAGGAACTTCAGGGAAGCAAGATCAAACCCTTGTGGGGGACCGCTCAGCTATTCGTGCAGCCTCGTTACATGCATGGTGCCGCTACT AGCTCGGAGCTTGGTGTATATGCATACGCTGCTGCACAAGTTAAGAAAGCTATGGAGGTTACACATTACTTGGGTGGAGAAAACTATGTCTTTTGGGGAG GAAGGGAGGGTTACCAGACTCTCTTGAATACAGATATGGAAAGAGAACTTAACCATTTGGCTAGTTTCTTCCACTCTGCTGTTGCATACAAGAAAAAGAT TGGATTCAACGGTACTTTGCTAATTGAGCCGAAGCCTCAAGAACCAACTAAACACCAGTATGATTGGGATGCAGCCACAAGTGCGAATTTCTTGAGGAAA TATGACCTTCTAGGAGAGTTCAAGCTCAACATCGAGTGCAACCATGCCACTCTTTCTGGTCACAGCTGTCACCATGAACTCGAGACCGCACGGATCAATG GGTTGCTGGGTAATATCGATGCCAACACTGGTGACCCTCAAGTTGGATGGGATACTGATCAGTTCATGACTGATATATCTGAGGCGACTATGGTCATGCT TAGTGTCATTAGAAATAGCACAGATGTTGAGGACATCTTCATTGCTCATGTTAGTGGAATGGATACGTTGGCTCGTGGCCTCCGAAACGCTGCTAAGCTG ATCGAGGATGGTTCTTTGAGCAACCTCGTTCGCAAGAGGTACGAAAGCTTTGAATCCGAAATCGGGAAGAAGATCGAGGCTGGGGAAGCCGATTTCGAGC TTCTGGAGAAGAAAGCACTTGAATGGGGTGAACCCAAGGTTCCTTCTGCCAAGCAGGAACTTGCTGAGATGCTTTTCCAGTCAGCTTTGTAG
AA sequence Show only first row Show all	>Lus10006983 pacid=23165429 polypeptide=Lus10006983 locus=Lus10006983.g ID=Lus10006983.BGIv1.0 annot-version=v1.0 MIKMKGSRILLLLLCLIVAAYTVIAAAPPTCPANLEGGCGDSDEWKGEFFPGIPQIKYEGPNTKNHLAYKWYNAEEVILGKKMKDWMRFSVAFWHTFRGV GVDPFGGPTKFWPWEDSTNSVAMAKRRMRANFELLEKLGVDYWCFHDRDIAPEGNTLKESNANLDEVVALAKELQGSKIKPLWGTAQLFVQPRYMHGAAT SSELGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTLLNTDMERELNHLASFFHSAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATSANFLRK YDLLGEFKLNIECNHATLSGHSCHHELETARINGLLGNIDANTGDPQVGWDTDQFMTDISEATMVMLSVIRNSTDVEDIFIAHVSGMDTLARGLRNAAKL IEDGSLSNLVRKRYESFESEIGKKIEAGEADFELLEKKALEWGEPKVPSAKQELAEMLFQSAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	0	1
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	1.0	0.9850
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	1.4	0.9846
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	1.7	0.9814
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	2.0	0.9796
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	2.6	0.9653
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	3.5	0.9620
AT3G47800			Galactose mutarotase-like supe...		Lus10023611 [exp]	3.6	0.9612
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	4.5	0.9659
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	5.8	0.9590
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	8.1	0.9655

Compare expression of checked genes

Lus10006983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.