Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 348 / 1e-118 Protein kinase superfamily protein (.1) AT3G15890 331 / 7e-112 Protein kinase superfamily protein (.1) AT1G70460 290 / 1e-91 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 287 / 6e-91 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24540 281 / 2e-90 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G68690 285 / 5e-90 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G24550 284 / 5e-90 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G26940 278 / 5e-90 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT1G26150 284 / 5e-89 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT4G34500 273 / 4e-88 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001323 [exp] 746 / 0 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10019988 [exp] 634 / 0 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10031673 [exp] 439 / 7e-154 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10011490 [exp] 436 / 6e-153 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10023130 [exp] 413 / 8e-144 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10035071 [exp] 294 / 5e-94 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10017898 [exp] 292 / 2e-92 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10011098 [exp] 287 / 3e-91 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 280 / 3e-89 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173800 [exp] 599 / 0 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 439 / 2e-154 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.015G134500 [exp] 434 / 3e-152 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 430 / 1e-150 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 427 / 4e-150 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 295 / 1e-93 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 286 / 2e-90 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G105200 [exp] 285 / 8e-90 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 285 / 1e-89 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 274 / 3e-89 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006985 pacid=23165444 polypeptide=Lus10006985 locus=Lus10006985.g ID=Lus10006985.BGIv1.0 annot-version=v1.0 ATGAAGGATGCGGGGACGACCAACGTGGTAGCCCCGAATTACACGTCGTGGAGGATCTTCACGTACAAGGAGCTACAAATAGCCACCAATGGGTTTAGTG AAGACAACAAGCTCGGAGAAGGAGGGTTCGGGAGTGTCTATTGGGGCAAAACCAACGACGGCCTTCAGATTGCGGTGAAGAAGTTGAAGGCGATGAACTC GAAAGCGGAGATGGAGTTTGCGGTGGAAGTAGAAGTACTTGGAAGGGTTCGCCATAAGAACTTGCTTGGCCTCAGAGGCTATTGCGCCGGCACCGATCAA CGGCTGATAGTTTACGACTACATGCCGAATCTCAGCCTCCTCTCCCACCTCCACGGCCAATTCGCCGGAGAATCCCAACTCAATTGGAAGCGCCGGATGA AGGTCGCCATTGGCTCCGGTGAAGGCTTGATGTATTTGCACCACGAGGCGGCACCACATATAATCCACAGGGACGTAAAGGCGAGCAACGTCCTTCTCGA CTCAAACTTCGACCCACTGGTAGCCGATTTCGGGTTCGCAAAGCTGATTCCAGATGGCGTAAGTCACATGACGACACGTGTCAAGGGAACCCTAGGCTAC TTAGCCCCCGAGTACGCTATGTGGGGTAAAGTCTCCGAGAGTTGCGATGTCTATAGTTTTGGGATCTTGCTGCTAGAAATCGTAACGGGCCGAAAACCCA TTGAGAAGATGCCCGGTGGAGTTAAGCGGACCATAACCGAATGGGCCGAGCCGTACATAGTCCAGGGGAAGTTCAAGGACATGGTCGATCCGAAACTTCG AGGGAACTTCGACGAGAACCAAGTCAAACAAGCCATATACGTCGCCGCACTCTGCGTGCAGAACGAGCCCGAGAAGCGGCCCAACATGAAGGAAGTGGTG AACATGTTGAAGAACTATGACTCGAGGAGTAGGCCGGTTCAGGCCCGATTGGAGAGTATCAAGTATAGAGAGGATTTGATGGCGATGGATCAATCGGACG ATGAGGATGAAGAGGGGAACGACGGTAGAGGTGGTGGAGGAGGAAACCATGGTGGCGTGTTGCCGGAGGAGAGTGGGTATGGGGTGTTTAGTGCTTTGGA ATTGCCTACATTGCATGACCCGTACAAACGACATGGAAACACCAAGAGATTTGTATGA
AA sequence Show only first row Show all	>Lus10006985 pacid=23165444 polypeptide=Lus10006985 locus=Lus10006985.g ID=Lus10006985.BGIv1.0 annot-version=v1.0 MKDAGTTNVVAPNYTSWRIFTYKELQIATNGFSEDNKLGEGGFGSVYWGKTNDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGTDQ RLIVYDYMPNLSLLSHLHGQFAGESQLNWKRRMKVAIGSGEGLMYLHHEAAPHIIHRDVKASNVLLDSNFDPLVADFGFAKLIPDGVSHMTTRVKGTLGY LAPEYAMWGKVSESCDVYSFGILLLEIVTGRKPIEKMPGGVKRTITEWAEPYIVQGKFKDMVDPKLRGNFDENQVKQAIYVAALCVQNEPEKRPNMKEVV NMLKNYDSRSRPVQARLESIKYREDLMAMDQSDDEDEEGNDGRGGGGGNHGGVLPEESGYGVFSALELPTLHDPYKRHGNTKRFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52540			Protein kinase superfamily pro...		Lus10006985 [exp]	0	1
					Lus10000325 [exp]	2.6	1.0000
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10004735 [exp]	4.6	1.0000
					Lus10002099 [exp]	5.3	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	7.5	1.0000
					Lus10025316 [exp]	7.7	1.0000
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	8.4	1.0000
					Lus10011594 [exp]	8.4	1.0000
					Lus10032121 [exp]	8.8	1.0000
AT5G39200			unknown protein		Lus10030710 [exp]	8.9	1.0000
AT4G20800			FAD-binding Berberine family p...		Lus10006507 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10006985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.