Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24920 62 / 8e-13 ATGDU5 glutamine dumper 5 (.1) AT4G25760 61 / 4e-12 ATGDU2 glutamine dumper 2 (.1) AT5G57685 61 / 7e-12 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT4G31730 56 / 3e-10 ATGDU1, GDU1 glutamine dumper 1 (.1) AT2G24762 54 / 1e-09 ATGDU4 glutamine dumper 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008910 [exp] 169 / 1e-53 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006987 [exp] 120 / 8e-35 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019986 [exp] 104 / 2e-28 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019985 [exp] 104 / 2e-28 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 100 / 9e-27 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10026911 [exp] 70 / 3e-15 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10020107 [exp] 61 / 9e-12 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1) Lus10008909 [exp] 52 / 2e-09 AT5G57685 87 / 2e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173901 [exp] 87 / 1e-21 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.018G013600 [exp] 75 / 4e-17 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.006G267900 [exp] 73 / 2e-16 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.004G108800 [exp] 37 / 0.001 AT5G24920 57 / 2e-11 glutamine dumper 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006986 pacid=23165435 polypeptide=Lus10006986 locus=Lus10006986.g ID=Lus10006986.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCAAGATTACCCTTCAACGTTCCTCCGGCGGCGGCCACCTCAGCAGCAGACCGGTCGCCGTGGCATTCCCCTGTTCCGTACTTGTTCGGAG GACTAGCAGCTATGTTGGGGCTGATCGCCTTCGCGCTTCTGATCCTCGCATGCTCCTACTGGAAGCTCTCCGGCCACCTCGAGAACGGCGAAAACGAGAG GGATCTTGAAGCAGGGGAAGAAACAGAGGACGAAAAGAAAGGAAAGAAACCGTACGAGGAGAAGGTTCTGGTTATAATGGCCGGACAGTTAAAGCCGACT TTTCTGGCGACGCCGGTCTCGAACTGCAGCAGAACGTCGTCGTTTGGGGAGACCGAGAAGACTTGTCGATGTGGGGAGAAATTGGAAAGCGAGAAACAGG GGAATGGCGAGGAAGAAGAAGAACAGAGTGGAAACAGGGGAGGTTTGGGAAATGATGAGCTGCCGTCGTCGGCGGCGGCGGAGGAGGTGGTGATTGTTGT TGCGGCGGCGGCGGATGATACGACGCCGCATCAGTAG
AA sequence Show only first row Show all	>Lus10006986 pacid=23165435 polypeptide=Lus10006986 locus=Lus10006986.g ID=Lus10006986.BGIv1.0 annot-version=v1.0 MAAARLPFNVPPAAATSAADRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGHLENGENERDLEAGEETEDEKKGKKPYEEKVLVIMAGQLKPT FLATPVSNCSRTSSFGETEKTCRCGEKLESEKQGNGEEEEEQSGNRGGLGNDELPSSAAAEEVVIVVAAAADDTTPHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006986 [exp]	0	1
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	3.2	0.8864
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10000196 [exp]	3.5	0.8694
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	3.7	0.8854
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	11.0	0.8401
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	11.4	0.8723
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	12.4	0.8488
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	13.9	0.8464
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	20.1	0.8348
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	21.0	0.7765
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	21.6	0.8415

Compare expression of checked genes

Lus10006986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.