Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57685 67 / 1e-14 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT4G25760 59 / 2e-11 ATGDU2 glutamine dumper 2 (.1) AT5G24920 53 / 2e-09 ATGDU5 glutamine dumper 5 (.1) AT2G24762 51 / 1e-08 ATGDU4 glutamine dumper 4 (.1) AT4G31730 50 / 3e-08 ATGDU1, GDU1 glutamine dumper 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008910 [exp] 121 / 4e-35 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006986 [exp] 117 / 1e-33 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10008909 [exp] 84 / 2e-21 AT5G57685 87 / 2e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019985 [exp] 84 / 8e-21 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019986 [exp] 83 / 2e-20 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 80 / 4e-19 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10026911 [exp] 59 / 5e-11 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10020107 [exp] 56 / 6e-10 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173901 [exp] 82 / 4e-20 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.006G267900 [exp] 71 / 1e-15 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.018G013600 [exp] 60 / 1e-11 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.004G108800 [exp] 40 / 6e-05 AT5G24920 57 / 2e-11 glutamine dumper 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006987 pacid=23165411 polypeptide=Lus10006987 locus=Lus10006987.g ID=Lus10006987.BGIv1.0 annot-version=v1.0 ATGGAAGCCACAAGTCAACCCGTCGGAGTAAATCTTCCGGCGGCCACGTCAGCAGCGGAGCCGTCGCCGTGGCATTCCCCTGTTCCGTACTTGTTCGGCG GATTAGCAGCCATGTTGGGGCTGATTGCCTTCGCGCTGCTGATCCTCGCTTGCTCCTACTGGAAGCTCTCCGGACACCTCGAGAACGGCGAAAACGATGA TCAGAGGGATCTAGAAGCAGGGGAAGGCGGAGAAACAGAGGAGAAAGGGAAGAAGAAACAATACGAGGAGAAGGTTTTGGTTATAATGGCTGGACAAGTG AAGCCGACTTTTCTTGCGACTCCGGTGACGAGCAGAAGAACGTCGTCGTTTGGGGACGACGGTGGGAGTGAGAAGACTTGTCGATGTGGGGAGAAATTGG ACGGCGAGAAACAGGGGAATAGTGAGGAAGAAGAAGAGAATGGAAACAGGGGAGGTTTGAGAAGTGATGATACGACGACGCATTAG
AA sequence Show only first row Show all	>Lus10006987 pacid=23165411 polypeptide=Lus10006987 locus=Lus10006987.g ID=Lus10006987.BGIv1.0 annot-version=v1.0 MEATSQPVGVNLPAATSAAEPSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGHLENGENDDQRDLEAGEGGETEEKGKKKQYEEKVLVIMAGQV KPTFLATPVTSRRTSSFGDDGGSEKTCRCGEKLDGEKQGNSEEEEENGNRGGLRSDDTTTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006987 [exp]	0	1
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	10.3	0.6822
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	12.3	0.6499
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10006852 [exp]	13.6	0.6600
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	17.9	0.6453
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026931 [exp]	28.5	0.6018
AT4G25330			unknown protein		Lus10012314 [exp]	29.4	0.6175
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	33.2	0.6578
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10026266 [exp]	42.0	0.6386
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	58.0	0.6312
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	61.8	0.6054

Compare expression of checked genes

Lus10006987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.