Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31955 603 / 0 CNX2 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008908 [exp] 790 / 0 AT2G31955 605 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024100 [exp] 629 / 0 AT2G31955 610 / 0.0 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3) Potri.001G230604 [exp] 485 / 8e-172 AT2G31955 458 / 3e-161 cofactor of nitrate reductase and xanthine dehydrogenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0036 [flax] [poplar] PF06463 [flax] [poplar] Mob_synth_C Molybdenum Cofactor Synthesis C
Representative CDS sequence Show only first row Show all	>Lus10006989 pacid=23165413 polypeptide=Lus10006989 locus=Lus10006989.g ID=Lus10006989.BGIv1.0 annot-version=v1.0 ATGATTACGGCGACGATGAGGCGGCAACTGGCCGCTGCAAATAGACTTACTAACTGGCATTTCCAATTCACCAACTTCAGTTTATCACAGGTCAATTCTC AACATGGCAGCCTTTGTAGTGGTGGTACCTTCTTCAACACCTATGCAACAACCTCTTGTGGTGCTAAGCTGCAAGATGATCATCATCGTCCAGATGCTAA GAATCTCGTTTCCAATATGTTGGTTGATTCCTTTGGAAGGATGCACACTTACCTCAGAATCTCATTGACAGAGCGCTGCAACCTACGCTGCCAATACTGC ATGCCATCCGAAGGCGTGGAGCTCACTCCTTCCCCTCAGCTCCTCACCTTAGATGAGATTGTTCGCTTGGCCGGTCTCTTTGTCTCTTCCGGAGTCAACA AGATTCGCCTGACCGGTGGTGAGCCAACCGTGAGGAAAGATATTGAGGAAATATGCTCCCAATTGTCCAGCCTGAAAGGTCTCAAGACACTTTCCATTAC TACCAACGGACTTACCCTTGCCAAGAAGCTTCCCAACCTCAAGGAAAATGGACTTACTTCGGTTAACATTAGTCTGGACACGTTGGTACCGGCCAAGTTT GAGTTCTTGACCAGGCGTAAAGGGCACCAAAGGGTTCTGGATTCGATTCATGCTGCTGTTGAGTGTGGCTACAATCCTGTCAAAGTGAATTGTGTGGTCA TGCGTGGCTTGAACGATGACGAGATCTGTGATTTCGTGAAGTTGACTCGAGACAAACCAATCAATGTCCGGTTCATCGAGTTCATGCCCTTTGATGGAAA TGTTTGGAATGTGAAAAAACTCGTTCCTTACTCGGAAATGTTGGATAGAGTGAAAAAGCAGTTTCCAAGCCTAGAGAGAATCCAGGATCACCCCACTGAA ACAGCCAAGAACTTCAAGATAGAGGGGCATCTCGGCACCGTTTCCTTCATCACGTCGATGACTGAGCATTTCTGTGCTGGCTGCAATAGGCTCAGACTTT TAGCCGATGGAAATTTCAAAGTATGCCTTTTTGGCCCTTCTGAGGTTAGCTTAAGAGATCCCCTTCGCAATGGTTCTGATGAAAATGAGCTTAGAGAAAT AATCGGCACCGCGGTGAAGAGGAAAAAAGCTTCACATGCTGGAATGTTTGATCTTGCGAAGACGGCGAATAGACCCATGATACACATTGGTGGCTGA
AA sequence Show only first row Show all	>Lus10006989 pacid=23165413 polypeptide=Lus10006989 locus=Lus10006989.g ID=Lus10006989.BGIv1.0 annot-version=v1.0 MITATMRRQLAAANRLTNWHFQFTNFSLSQVNSQHGSLCSGGTFFNTYATTSCGAKLQDDHHRPDAKNLVSNMLVDSFGRMHTYLRISLTERCNLRCQYC MPSEGVELTPSPQLLTLDEIVRLAGLFVSSGVNKIRLTGGEPTVRKDIEEICSQLSSLKGLKTLSITTNGLTLAKKLPNLKENGLTSVNISLDTLVPAKF EFLTRRKGHQRVLDSIHAAVECGYNPVKVNCVVMRGLNDDEICDFVKLTRDKPINVRFIEFMPFDGNVWNVKKLVPYSEMLDRVKKQFPSLERIQDHPTE TAKNFKIEGHLGTVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRNGSDENELREIIGTAVKRKKASHAGMFDLAKTANRPMIHIGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10006989 [exp]	0	1
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	11.0	0.7690
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	12.2	0.7513
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10008564 [exp]	13.9	0.7966
AT3G50150			Plant protein of unknown funct...		Lus10039777 [exp]	33.0	0.7307
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	38.1	0.6898
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	41.4	0.7490
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	63.0	0.7112
AT5G22400			Rho GTPase activating protein ...		Lus10020625 [exp]	70.0	0.6946
AT3G57280			Transmembrane proteins 14C (.1...		Lus10031047 [exp]	85.0	0.7108
					Lus10004960 [exp]	88.5	0.7120

Compare expression of checked genes

Lus10006989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.